Factsheet for Solyc05g032690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 4
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0047g00380.t01	Wine grape	cytosol	61.8	47.41
VIT_13s0047g00500.t01	Wine grape	cytosol, peroxisome, plastid	71.91	18.29
Solyc07g043690.1.1	Tomato	cytosol	39.33	18.13
VIT_13s0047g00410.t01	Wine grape	cytosol	69.66	16.94
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	69.66	16.19
VIT_13s0047g00390.t01	Wine grape	endoplasmic reticulum, golgi	68.54	16.09
Solyc01g094090.2.1	Tomato	cytosol	56.18	15.2
VIT_13s0047g00370.t01	Wine grape	cytosol, peroxisome, plastid	20.22	14.88
KRH09309	Soybean	mitochondrion	65.17	14.57
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	60.67	14.25
Solyc01g080930.2.1	Tomato	cytosol	56.18	13.05
Solyc01g090700.2.1	Tomato	mitochondrion	57.3	12.62
Solyc12g011160.1.1	Tomato	cytosol	53.93	12.5
Solyc05g018410.1.1	Tomato	plastid	41.57	12.33
Solyc10g085630.1.1	Tomato	mitochondrion	55.06	11.95
Solyc06g054520.1.1	Tomato	cytosol	51.69	11.16
Solyc07g043680.2.1	Tomato	cytosol	49.44	11.06
Solyc07g044710.1.1	Tomato	plastid	48.31	10.91
Solyc07g044720.1.1	Tomato	plastid	49.44	10.45
Solyc07g022880.2.1	Tomato	cytosol	16.85	10.42
Solyc07g044730.2.1	Tomato	endoplasmic reticulum, vacuole	49.44	10.3
Solyc01g108790.1.1	Tomato	nucleus	12.36	6.25
Solyc07g044740.1.1	Tomato	cytosol	4.49	3.08
Solyc05g032680.2.1	Tomato	mitochondrion	2.25	1.77

Protein Annotations

Gene3D:3.90.226.10	MapMan:50.3.1	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0004300	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006629	GO:GO:0006635	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	InterPro:HIBYL-CoA-H	UniProt:K4C050	PFAM:PF16113	PANTHER:PTHR43176	PANTHER:PTHR43176:SF6
SUPFAM:SSF52096	EnsemblPlantsGene:Solyc05g032690.2	EnsemblPlants:Solyc05g032690.2.1	UniParc:UPI00027660BA	:	:

Description

No Description!

Coordinates

chr5:+:45950185..45952074

Molecular Weight (calculated)

9436.2 Da

IEP (calculated)

8.949

GRAVY (calculated)

-0.039

Length

89 amino acids

Sequence
(BLAST)

1: MGGGAGLSMN AKFRIVTENT VFAMPEASFG HYPDVGASYF LSRLPGHFGE YLGLTGKKIN GSEMIASGLA THFVYSKDNN GGSFVSPRL

Best Arabidopsis Sequence Match ( AT2G30650.1 )
(BLAST)

001: MASHSQVLVE EKSSVRILTF NRPKQLNALS FHMVSRLLQL FLAYEEDPSV KLVVLKGQGR AFSAGGDIPP IVRDILQGKL IRGAHYFKVG YTLNYVLSTY
101: RKPQVSILNG IVMGGGAGLS TNGRFRIATE NTVFAMPETA LGLFPDVGAS YFLSRLPGFF GEYVGLTGAR LDGAEMLACG LATHFVPSIS LTALEAELYK
201: VGSSNQTFIS TILDAYAEYP HLNQHSSYHR LDVIDRCFSK RTVEEIFSAL EREVTQKPND WLLATIQALE KASPSCLKIS LRSIREGRLQ GVGQCLIREY
301: RMVCHVMKGD ISKDFVEGCR AVLIDKDRNP KWQPRRLEDV TDSMVDQYFE RVEDEEGWED LKFPPRNNLP ALAIAAKL

Arabidopsis Description

Probable 3-hydroxyisobutyryl-CoA hydrolase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEY5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.