Factsheet for VIT_13s0047g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum

Predictor Summary:

plastid 2
endoplasmic reticulum 5
plasma membrane 4
vacuole 4
golgi 5
extracellular 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0047g00380.t01	Wine grape	cytosol	25.33	82.76
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	81.79	80.94
VIT_13s0047g00370.t01	Wine grape	cytosol, peroxisome, plastid	25.59	80.17
VIT_13s0047g00410.t01	Wine grape	cytosol	70.98	73.5
Solyc05g032690.2.1	Tomato	cytosol, mitochondrion, nucleus	16.09	68.54
VIT_13s0047g00500.t01	Wine grape	cytosol, peroxisome, plastid	58.05	62.86
VIT_15s0045g01170.t01	Wine grape	cytosol	19.79	51.37
KRH09309	Soybean	mitochondrion	53.56	51.01
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	46.97	48.11
Solyc05g032680.2.1	Tomato	mitochondrion	11.08	37.17
VIT_04s0008g06610.t01	Wine grape	mitochondrion	39.84	37.1
VIT_15s0021g02440.t01	Wine grape	extracellular, plasma membrane, plastid	15.83	37.04
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	37.73	36.57
VIT_15s0021g02240.t01	Wine grape	mitochondrion	38.79	36.3
VIT_00s0229g00140.t01	Wine grape	mitochondrion	39.84	35.7
VIT_12s0028g00590.t01	Wine grape	cytosol	35.88	34.96
VIT_11s0016g04290.t01	Wine grape	mitochondrion	29.29	24.61

Protein Annotations

Gene3D:3.90.226.40	MapMan:4.2.7.4	ProteinID:CCB52180	ProteinID:CCB52180.1	InterPro:ClpP/crotonase-like_dom_sf	UniProt:F6HIV5
EMBL:FN595767	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	InterPro:HIBYL-CoA-H	PFAM:PF16113	PANTHER:PTHR43176	PANTHER:PTHR43176:SF6
SUPFAM:SSF52096	TMHMM:TMhelix	UniParc:UPI00021090C5	ArrayExpress:VIT_13s0047g00390	EnsemblPlantsGene:VIT_13s0047g00390	EnsemblPlants:VIT_13s0047g00390.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:+:16444300..16469108

Molecular Weight (calculated)

42512.2 Da

IEP (calculated)

9.204

GRAVY (calculated)

0.079

Length

379 amino acids

Sequence
(BLAST)

001: MLYLSHKLVF VLLGAITYPM IYLNLKVLFE ESSYARKMIL NRPHKLNSLT YEMISQILRN LEVYEKDPMI KLLIVKGQGK AFCAGGDVVR VVLSINEGHW
101: SFGASFYKKQ LTLDYFLATC TKPLVSLING IVMGGGAGLS MNSMFRVVTE NTVFAMPEGQ IGFFPDVGAS YFLSRLPGSF GEYLGLTGAR LDGNEMLACG
201: LATHFVLSKD LLLLESALSG VASSDASTIS RVISGFSSKI SLKKDSAYRR LETINKCFSR RTVEEILSIL ENEAANGDNK WIIQAISSMK SASPTSLKIF
301: LKLIREGRAK ELKDCLIQDY AIACHMFRRS FNPDFIEGSR AKLFEKRKQP KDIMHYQSCQ IAFMYILSQN KDQEEMVYV

Best Arabidopsis Sequence Match ( AT5G65940.3 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKATGGH EG

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.