Factsheet for VIT_04s0008g06610.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g085630.1.1	Tomato	mitochondrion	74.45	73.9
KRH05370	Soybean	mitochondrion	72.24	72.24
KRH15650	Soybean	mitochondrion	71.5	71.5
AT4G31810.1	Thale cress	mitochondrion	70.76	70.42
Bra010219.1-P	Field mustard	mitochondrion	69.29	68.78
CDY23311	Canola	mitochondrion	68.8	68.29
CDY39880	Canola	mitochondrion	68.3	67.8
VIT_15s0021g02240.t01	Wine grape	mitochondrion	66.58	66.91
GSMUA_Achr4P27030_001	Banana	mitochondrion	66.09	66.42
Zm00001d029860_P001	Maize	plasma membrane	64.37	64.53
EER91964	Sorghum	mitochondrion	64.13	64.29
TraesCS1A01G210300.2	Wheat	mitochondrion	63.88	63.73
TraesCS1D01G213600.1	Wheat	mitochondrion	63.88	63.73
TraesCS1B01G224200.1	Wheat	mitochondrion	63.88	63.73
Os10t0552900-01	Rice	mitochondrion	63.15	62.53
GSMUA_Achr4P30390_001	Banana	mitochondrion	65.6	60.82
VIT_15s0021g02440.t01	Wine grape	extracellular, plasma membrane, plastid	22.36	56.17
VIT_00s0229g00140.t01	Wine grape	mitochondrion	57.25	55.08
VIT_13s0047g00380.t01	Wine grape	cytosol	13.51	47.41
VIT_15s0045g01170.t01	Wine grape	cytosol	15.97	44.52
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	40.29	44.32
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	40.54	43.08
VIT_13s0047g00500.t01	Wine grape	cytosol, peroxisome, plastid	35.63	41.43
VIT_12s0028g00590.t01	Wine grape	cytosol	39.56	41.39
VIT_13s0047g00410.t01	Wine grape	cytosol	35.87	39.89
VIT_13s0047g00390.t01	Wine grape	endoplasmic reticulum, golgi	37.1	39.84
VIT_13s0047g00370.t01	Wine grape	cytosol, peroxisome, plastid	11.3	38.02
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	33.91	35.29
VIT_11s0016g04290.t01	Wine grape	mitochondrion	29.73	26.83

Protein Annotations

EntrezGene:100257773	wikigene:100257773	Gene3D:3.90.226.40	MapMan:50.3.1	ProteinID:CBI21140	ProteinID:CBI21140.3
InterPro:ClpP/crotonase-like_dom_sf	UniProt:D7SV41	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0016787
InterPro:HIBYL-CoA-H	EntrezGene:LOC100257773	wikigene:LOC100257773	PFAM:PF16113	PANTHER:PTHR43176	PANTHER:PTHR43176:SF8
SUPFAM:SSF52096	UniParc:UPI0001982FE2	ArrayExpress:VIT_04s0008g06610	EnsemblPlantsGene:VIT_04s0008g06610	EnsemblPlants:VIT_04s0008g06610.t01	unigene:Vvi.17866
RefSeq:XP_002283319	RefSeq:XP_002283319.1	:	:	:	:

Description

No Description!

Coordinates

chr4:-:6578496..6598764

Molecular Weight (calculated)

45541.7 Da

IEP (calculated)

5.238

GRAVY (calculated)

-0.162

Length

407 amino acids

Sequence
(BLAST)

001: MQRAKAVLSP AVRCSLQRFG VFSHHRSFSA LPNYARNDDL QEQVLVEGRA KSRAAILNRP SDLNALTIPM VARLKRLYES WEENSDLGFV IMKGSGRALC
101: SGGDVVALNQ LINEGKVEEC KKFFETLYKF VYLLGTYVKP NVAIVDGITM GGGAGISIPA MFRVVTDKTV FATPETQMGF HPDAGASFYL SRLPGYLGEY
201: LALTGEKLNG VEMIACGLAT HYSLTARLPL IEERLGKLIT DDPSVIESSL EQYGDLVYPD KRSVLHKIET IDKCFCHDTV EEIINALENE ASSSYDEWSA
301: TALKKLKEAS PLSLKVTLRS IREGRFQPLD QCLAREYRIS LVGITKWVSD DFCEGVRARF VDKDFAPKWD PPSLGEVTKD MVDCYFTRLD EFEPELELPT
401: ALREPYM

Best Arabidopsis Sequence Match ( AT4G31810.1 )
(BLAST)

001: MQTVKALRRV SEPLQWVRSV SYGRRFSALP NYSASDADFE DQVLVEGKAK SRAAILNNPS SLNALSAPMV GRLKRLYESW EENPAISFVL MKGSGKTFCS
101: GADVLSLYHS INEGNTEESK LFFENLYKFV YLQGTYLKPN IAIMDGVTMG CGGGISLPGM FRVATDKTVL AHPEVQIGFH PDAGASYYLS RLPGYLGEYL
201: ALTGQKLNGV EMIACGLATH YCLNARLPLI EERIGKLLTD DPAVIEDSLA QYGDLVYPDS SSVLHKIELI DKYFGLDTVE EIIEAMENEA ANSCNEWCKK
301: TLKQIKEASP LSLKITLQSI REGRFQTLDQ CLTHEYRISI CGVSKVVSGD FCEGIRARLV DKDFAPKWDP PRLEDVSKDM VDCYFTPASE LDDSDSELKL
401: PTAQREPYF

Arabidopsis Description

3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.