Factsheet for VIT_15s0021g02240.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g02440.t01	Wine grape	extracellular, plasma membrane, plastid	29.14	72.84
VIT_04s0008g06610.t01	Wine grape	mitochondrion	66.91	66.58
KRH66607	Soybean	mitochondrion	67.16	62.53
VIT_00s0229g00140.t01	Wine grape	mitochondrion	60.74	58.16
VIT_13s0047g00380.t01	Wine grape	cytosol	13.09	45.69
VIT_15s0045g01170.t01	Wine grape	cytosol	16.05	44.52
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	40.0	43.78
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	40.25	42.56
VIT_12s0028g00590.t01	Wine grape	cytosol	39.51	41.13
VIT_13s0047g00410.t01	Wine grape	cytosol	36.05	39.89
VIT_13s0047g00500.t01	Wine grape	cytosol, peroxisome, plastid	33.83	39.14
VIT_13s0047g00390.t01	Wine grape	endoplasmic reticulum, golgi	36.3	38.79
VIT_13s0047g00370.t01	Wine grape	cytosol, peroxisome, plastid	10.37	34.71
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	32.59	33.76
VIT_11s0016g04290.t01	Wine grape	mitochondrion	30.62	27.49

Protein Annotations

EntrezGene:100254744	wikigene:100254744	Gene3D:3.90.226.40	MapMan:50.3.1	ProteinID:CBI16620	ProteinID:CBI16620.3
InterPro:ClpP/crotonase-like_dom_sf	UniProt:D7SLU2	EMBL:FN594952	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:HIBYL-CoA-H	EntrezGene:LOC100254744	wikigene:LOC100254744	PFAM:PF16113	PANTHER:PTHR43176
PANTHER:PTHR43176:SF4	SUPFAM:SSF52096	UniParc:UPI00015C9B7C	ArrayExpress:VIT_15s0021g02240	EnsemblPlantsGene:VIT_15s0021g02240	EnsemblPlants:VIT_15s0021g02240.t01
unigene:Vvi.17151	RefSeq:XP_002274299	RefSeq:XP_002274299.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:+:13178875..13190810

Molecular Weight (calculated)

44730.4 Da

IEP (calculated)

5.074

GRAVY (calculated)

-0.186

Length

405 amino acids

Sequence
(BLAST)

001: MQSLKVLWRR RSGIRSPPFP THHRAFSYVP NPAAANDFDS EVLVEGEGCS RTAILNRPHV LNALNTSMGA RLQNLYKSWE ENPDIGFVVM KGSGRAFCAG
101: GDIVGLYNLI NKGRIEDCKE FFGTVYSFIY LVGTYLKPNV AILDGITMGG GAGVSIPGMF RVATDRTVFA TPETLIGFHT DAGASFHLSH LPGYWGEYLA
201: LTGEKLNGPE MIACGLATHY APSAKLPLIE EGLGKLVTDD PSVIEASLEQ YGSLISPDNR GLLQRIETLD KCFSHGTVEE IIDALESETA RTQDPWCSST
301: LKRLKEASPL SLKVCLRSIR EGRFQTLDQC LVREYRMSVQ GISGQISNDF CEGIRARMVE KDYAPKWNPP SLEEVSSDMV DQYFSPISEL EPELELPTTL
401: REAFT

Best Arabidopsis Sequence Match ( AT3G60510.1 )
(BLAST)

001: MHNAKGLLGR IVRDKLWRFG YRRSLCSLKL TSEDLDYQVL VEGSGCSRTA ILNRPPALNA LTTHMGYRLQ KLYKNWEEDP NIGFVMMKGS GRAFCAGGDI
101: VSLYHLRTRG SPDAIREFFS SLYSFIYLLG TYLKPHVAIL NGVTMGGGTG VSIPGTFRVA TDRTIFATPE TIIGFHPDAG ASFNLSHLPG RLGEYLGLTG
201: LKLSGAEMLA CGLATHYIRS EEVPVMEEQL KKLLTDDPSV VESCLEKCAE VAHPEKTGVI RRIDLLEKCF SHDTVEEIID SLEIEASRRK DTWCITTLRR
301: LKESSPLSLK VALRSIREGR LQTLDQCLIR EYRMSLQGLI GPMSGNFCEG VRARLIDKDE APKWDPPSLE KVSEDMVDDY FCALTPTEPD LDLPVKLRES
401: I

Arabidopsis Description

ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Source:UniProtKB/TrEMBL;Acc:F4JBV0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.