Factsheet for VIT_09s0002g07160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, peroxisome, mitochondrion

Predictor Summary:

nucleus 1
peroxisome 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05800.t01
VIT_06s0004g04570.t01
VIT_06s0080g00770.t01
VIT_08s0007g06520.t01
VIT_11s0016g02850.t01
VIT_12s0142g00610.t01
VIT_13s0019g01240.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	VIT_01s0011g05800.t01	AT1G14830.1	21798944
AT5G65940.1	VIT_06s0080g00770.t01	AT2G42790.1	21798944
AT5G65940.1	VIT_12s0142g00610.t01	AT2G42790.1	21798944
AT5G65940.1	VIT_06s0004g04570.t01	AT3G12110.1	21798944
AT5G65940.1	VIT_08s0007g06520.t01	AT3G12110.1	21798944
AT5G65940.1	VIT_13s0019g01240.t01	AT3G12110.1	21798944
AT5G65940.1	VIT_11s0016g02850.t01	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066411	Potato	nucleus	28.11	71.23
AT5G65940.1	Thale cress	peroxisome	72.16	70.63
CDY57769	Canola	peroxisome	70.81	70.24
Bra031802.1-P	Field mustard	cytosol	71.08	69.95
CDY55104	Canola	cytosol	71.08	69.95
PGSC0003DMT400066414	Potato	cytosol	31.62	68.42
PGSC0003DMT400066409	Potato	cytosol	25.68	68.35
PGSC0003DMT400004567	Potato	extracellular	24.32	68.18
Solyc01g080930.2.1	Tomato	cytosol	69.46	67.1
AT2G30660.1	Thale cress	peroxisome	68.11	66.67
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	47.3	65.79
AT2G30650.1	Thale cress	peroxisome	67.03	65.61
CDY31775	Canola	peroxisome	67.57	65.27
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	11.89	64.71
CDX97894	Canola	peroxisome	67.57	64.43
VIT_15s0045g01170.t01	Wine grape	cytosol	25.41	64.38
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	65.95	64.38
CDY45442	Canola	mitochondrion	57.57	64.35
Bra018392.1-P	Field mustard	cytosol	63.78	63.44
Zm00001d007726_P001	Maize	peroxisome	41.89	63.27
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	25.41	63.09
Zm00001d007746_P002	Maize	peroxisome	32.16	62.63
CDY62818	Canola	peroxisome	67.84	62.59
KRH07311	Soybean	nucleus	65.14	62.27
Bra018395.1-P	Field mustard	cytosol	62.7	62.2
Bra039975.1-P	Field mustard	peroxisome	64.59	62.08
PGSC0003DMT400004521	Potato	cytosol	39.19	61.97
TraesCS1D01G194800.2	Wheat	cytosol	63.78	61.94
Bra039968.1-P	Field mustard	peroxisome	66.49	61.65
CDY31769	Canola	peroxisome	66.76	61.6
TraesCS1B01G206000.1	Wheat	cytosol	62.97	61.15
EER91893	Sorghum	cytosol	63.78	61.14
PGSC0003DMT400000054	Potato	cytosol	62.97	60.68
Solyc01g094090.2.1	Tomato	cytosol	53.24	59.88
TraesCS1A01G190800.1	Wheat	plastid	63.24	59.69
CDY45439	Canola	plastid	63.51	59.49
Zm00001d021132_P004	Maize	extracellular	64.86	59.41
GSMUA_Achr5P13900_001	Banana	cytosol	49.46	58.65
PGSC0003DMT400004585	Potato	extracellular	42.16	58.43
VIT_13s0047g00380.t01	Wine grape	cytosol	17.84	56.9
Zm00001d023779_P001	Maize	extracellular	59.19	56.74
GSMUA_Achr5P13870_001	Banana	cytosol	60.54	56.71
GSMUA_Achr8P14800_001	Banana	cytosol	60.54	56.42
HORVU1Hr1G049960.6	Barley	mitochondrion	63.51	55.69
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	58.65	55.5
PGSC0003DMT400066419	Potato	cytosol	35.95	55.42
OQU84058	Sorghum	mitochondrion	60.81	54.88
KXG29172	Sorghum	peroxisome	57.3	54.78
VIT_13s0047g00410.t01	Wine grape	cytosol	52.16	52.73
VIT_13s0047g00500.t01	Wine grape	cytosol, peroxisome, plastid	49.19	52.0
Zm00001d007740_P001	Maize	peroxisome	52.43	51.46
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	52.97	51.17
Zm00001d007732_P002	Maize	extracellular	38.11	49.47
VIT_13s0047g00390.t01	Wine grape	endoplasmic reticulum, golgi	48.11	46.97
GSMUA_Achr5P13890_001	Banana	nucleus	20.0	46.25
Os12t0264500-02	Rice	endoplasmic reticulum	63.51	45.81
Zm00001d007728_P001	Maize	cytosol	17.57	45.77
VIT_13s0047g00370.t01	Wine grape	cytosol, peroxisome, plastid	14.86	45.45
Solyc01g108790.1.1	Tomato	nucleus	19.19	40.34
VIT_04s0008g06610.t01	Wine grape	mitochondrion	44.32	40.29
VIT_15s0021g02240.t01	Wine grape	mitochondrion	43.78	40.0
VIT_00s0229g00140.t01	Wine grape	mitochondrion	42.7	37.35
VIT_15s0021g02440.t01	Wine grape	extracellular, plasma membrane, plastid	16.22	37.04
VIT_12s0028g00590.t01	Wine grape	cytosol	38.38	36.5
VIT_11s0016g04290.t01	Wine grape	mitochondrion	31.89	26.16

Protein Annotations

EntrezGene:100256133	wikigene:100256133	Gene3D:3.90.226.40	MapMan:4.2.7.4	MapMan:4.2.7.6.1	ProteinID:CCB59620
ProteinID:CCB59620.1	InterPro:ClpP/crotonase-like_dom_sf	UniProt:F6HXF0	EMBL:FN596494	GO:GO:0003674	GO:GO:0003824
GO:GO:0003860	GO:GO:0016787	InterPro:HIBYL-CoA-H	EntrezGene:LOC100256133	wikigene:LOC100256133	PFAM:PF16113
PANTHER:PTHR43176	PANTHER:PTHR43176:SF6	SUPFAM:SSF52096	TIGR:TC64833	UniParc:UPI000210A4EE	ArrayExpress:VIT_09s0002g07160
EnsemblPlantsGene:VIT_09s0002g07160	EnsemblPlants:VIT_09s0002g07160.t01	unigene:Vvi.11144	RefSeq:XP_002264742	RefSeq:XP_002264742.1	:

Description

No Description!

Coordinates

chr9:-:7092519..7123519

Molecular Weight (calculated)

41376.6 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.157

Length

370 amino acids

Sequence
(BLAST)

001: MKMCSKDFST RLQANYNKSI EIYEGRLISK LLELFLAYEE DSNVKLVIMK GNGRAFCSGG DVAAVVHDIN RGNWKIGAKF FWEEYILNYV MATYSKPQVS
101: ILNGIVMGGG AGASVHGRFR IATENSVFAM PETALGLFPD VGASYFLSRF PGFFGEYVGL TGARLDGAEM LACGLATHFV PSARLSSLEA ALHKLDSSDP
201: AIISAVIDEY SLQPYLKDKS TYHRLDIINR CFSRRTIEEI LSALEREAVK SADDWISSTI QSLQKASPTS LKISLRSIRE GRVQGVGQCL IREYRMVCHV
301: MRGEVSKDFV EGCRAILFDK DKNPKWEPSR LDQLNDSMID QYFSRVDDEE WEDLKLPARS SYTASALAKL

Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.