Factsheet for VIT_00s0229g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g02240.t01	Wine grape	mitochondrion	58.16	60.74
Solyc01g090700.2.1	Tomato	mitochondrion	57.45	60.15
VIT_04s0008g06610.t01	Wine grape	mitochondrion	55.08	57.25
VIT_15s0021g02440.t01	Wine grape	extracellular, plasma membrane, plastid	20.8	54.32
PGSC0003DMT400043000	Potato	cytosol	24.82	53.85
VIT_13s0047g00380.t01	Wine grape	cytosol	12.77	46.55
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	39.48	43.6
VIT_12s0028g00590.t01	Wine grape	cytosol	39.48	42.93
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	37.35	42.7
VIT_13s0047g00500.t01	Wine grape	cytosol, peroxisome, plastid	34.04	41.14
VIT_13s0047g00410.t01	Wine grape	cytosol	34.99	40.44
VIT_13s0047g00390.t01	Wine grape	endoplasmic reticulum, golgi	35.7	39.84
VIT_13s0047g00370.t01	Wine grape	cytosol, peroxisome, plastid	10.87	38.02
VIT_15s0045g01170.t01	Wine grape	cytosol	13.0	37.67
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	31.68	34.27
VIT_11s0016g04290.t01	Wine grape	mitochondrion	29.79	27.94

Protein Annotations

EntrezGene:100254599	wikigene:100254599	Gene3D:3.90.226.40	MapMan:50.3.1	EMBL:AM458201	ProteinID:CAN76843
ProteinID:CAN76843.1	ProteinID:CCB60308	ProteinID:CCB60308.1	InterPro:ClpP/crotonase-like_dom_sf	UniProt:F6I042	EMBL:FN596504
GO:GO:0003674	GO:GO:0003824	GO:GO:0003860	GO:GO:0016787	InterPro:HIBYL-CoA-H	EntrezGene:LOC100254599
wikigene:LOC100254599	PFAM:PF16113	PANTHER:PTHR43176	PANTHER:PTHR43176:SF10	SUPFAM:SSF52096	UniParc:UPI000210A7B7
ArrayExpress:VIT_00s0229g00140	EnsemblPlantsGene:VIT_00s0229g00140	EnsemblPlants:VIT_00s0229g00140.t01	RefSeq:XP_002266134	RefSeq:XP_002266134.2	SEG:seg

Description

No Description!

Coordinates

chrUn:+:15495184..15503835

Molecular Weight (calculated)

47127.4 Da

IEP (calculated)

5.003

GRAVY (calculated)

-0.038

Length

423 amino acids

Sequence
(BLAST)

001: MERFKALNRL SHYRRTLFPH SSDSNSNSLC DDTVSSVVNF SYFSFSNGLE VMGVGWCFQV LVEGKASSRI VTLNRPHVLN AVVTPMGVRL IELYESWEKD
101: PHFGFVVIKG SGKAFSAGGD VVCLYQFMDE GRLEDCKDCF RTFYSLMYLI HTYMKPHVAL IDGVTMGAGA GISVLGTFCV ATDRTVFGTP EALIGFHPDG
201: GASYFLSHLP GYLGEYMGLT GATLSGAEMV ACGLATHYSL SAKIPLIEEQ LKTLLSDDPS VIEAVLAKFS DVAYPDERSV LCRIEMLDKC FGHDTVEEIV
301: NALESEATGS NDPWCISTLK KLRQASPLSL KIALRSIRES RSQTLEECLI REYRISVHAI SRQISSDFYE GVRARLVDRN FAPKWNPPRL EDVSEDMVDC
401: YFLPLGEYEP ELELPKKLQE AFD

Best Arabidopsis Sequence Match ( AT3G60510.1 )
(BLAST)

001: MHNAKGLLGR IVRDKLWRFG YRRSLCSLKL TSEDLDYQVL VEGSGCSRTA ILNRPPALNA LTTHMGYRLQ KLYKNWEEDP NIGFVMMKGS GRAFCAGGDI
101: VSLYHLRTRG SPDAIREFFS SLYSFIYLLG TYLKPHVAIL NGVTMGGGTG VSIPGTFRVA TDRTIFATPE TIIGFHPDAG ASFNLSHLPG RLGEYLGLTG
201: LKLSGAEMLA CGLATHYIRS EEVPVMEEQL KKLLTDDPSV VESCLEKCAE VAHPEKTGVI RRIDLLEKCF SHDTVEEIID SLEIEASRRK DTWCITTLRR
301: LKESSPLSLK VALRSIREGR LQTLDQCLIR EYRMSLQGLI GPMSGNFCEG VRARLIDKDE APKWDPPSLE KVSEDMVDDY FCALTPTEPD LDLPVKLRES
401: I

Arabidopsis Description

ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Source:UniProtKB/TrEMBL;Acc:F4JBV0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.