Factsheet for VIT_15s0045g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:

nucleus 2
peroxisome 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05800.t01
VIT_06s0004g04570.t01
VIT_06s0080g00770.t01
VIT_08s0007g06520.t01
VIT_11s0016g02850.t01
VIT_12s0142g00610.t01
VIT_13s0019g01240.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	VIT_01s0011g05800.t01	AT1G14830.1	21798944
AT5G65940.1	VIT_06s0080g00770.t01	AT2G42790.1	21798944
AT5G65940.1	VIT_12s0142g00610.t01	AT2G42790.1	21798944
AT5G65940.1	VIT_06s0004g04570.t01	AT3G12110.1	21798944
AT5G65940.1	VIT_08s0007g06520.t01	AT3G12110.1	21798944
AT5G65940.1	VIT_13s0019g01240.t01	AT3G12110.1	21798944
AT5G65940.1	VIT_11s0016g02850.t01	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066411	Potato	nucleus	26.34	70.55
Zm00001d007746_P002	Maize	peroxisome	31.2	64.21
Zm00001d007726_P001	Maize	peroxisome	40.15	64.08
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	11.0	63.24
PGSC0003DMT400066414	Potato	cytosol	26.6	60.82
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	23.02	60.4
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	55.5	58.65
PGSC0003DMT400004521	Potato	cytosol	35.04	58.55
PGSC0003DMT400004585	Potato	extracellular	39.13	57.3
CDY45442	Canola	mitochondrion	47.06	55.59
AT5G65940.1	Thale cress	peroxisome	51.41	53.17
CDY57769	Canola	peroxisome	50.38	52.81
Bra031802.1-P	Field mustard	cytosol	50.38	52.39
CDY55104	Canola	cytosol	50.38	52.39
Solyc01g080930.2.1	Tomato	cytosol	50.9	51.96
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	34.78	51.13
VIT_13s0047g00380.t01	Wine grape	cytosol	15.09	50.86
Bra018392.1-P	Field mustard	cytosol	48.34	50.81
AT2G30650.1	Thale cress	peroxisome	49.1	50.79
AT2G30660.1	Thale cress	peroxisome	48.85	50.53
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	48.59	50.13
PGSC0003DMT400066409	Potato	cytosol	17.65	49.64
CDY31775	Canola	peroxisome	48.59	49.61
KRH07311	Soybean	nucleus	48.85	49.35
CDX97894	Canola	peroxisome	48.59	48.97
EER91893	Sorghum	cytosol	48.08	48.7
PGSC0003DMT400004567	Potato	extracellular	16.37	48.48
TraesCS1D01G194800.2	Wheat	cytosol	46.55	47.77
CDY62818	Canola	peroxisome	48.59	47.38
Bra039968.1-P	Field mustard	peroxisome	48.34	47.37
Zm00001d021132_P004	Maize	extracellular	48.85	47.28
TraesCS1B01G206000.1	Wheat	cytosol	46.04	47.24
CDY31769	Canola	peroxisome	48.34	47.13
TraesCS1A01G190800.1	Wheat	plastid	46.8	46.68
Bra018395.1-P	Field mustard	cytosol	44.5	46.65
Bra039975.1-P	Field mustard	peroxisome	45.78	46.49
PGSC0003DMT400000054	Potato	cytosol	45.27	46.09
CDY45439	Canola	plastid	46.55	46.08
Solyc01g094090.2.1	Tomato	cytosol	38.11	45.29
OQU84058	Sorghum	mitochondrion	47.31	45.12
GSMUA_Achr8P14800_001	Banana	cytosol	45.52	44.84
Zm00001d023779_P001	Maize	extracellular	44.25	44.82
Zm00001d007732_P002	Maize	extracellular	32.48	44.56
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	42.71	43.6
GSMUA_Achr5P13870_001	Banana	cytosol	43.73	43.29
VIT_13s0047g00410.t01	Wine grape	cytosol	40.41	43.17
KXG29172	Sorghum	peroxisome	42.71	43.15
HORVU1Hr1G049960.6	Barley	mitochondrion	45.52	42.18
VIT_13s0047g00500.t01	Wine grape	cytosol, peroxisome, plastid	37.34	41.71
Solyc01g108790.1.1	Tomato	nucleus	18.67	41.48
GSMUA_Achr5P13890_001	Banana	nucleus	16.37	40.0
GSMUA_Achr5P13900_001	Banana	cytosol	31.71	39.74
Zm00001d007740_P001	Maize	peroxisome	37.85	39.26
VIT_13s0047g00390.t01	Wine grape	endoplasmic reticulum, golgi	36.57	37.73
Os12t0264500-02	Rice	endoplasmic reticulum	48.59	37.04
VIT_04s0008g06610.t01	Wine grape	mitochondrion	35.29	33.91
PGSC0003DMT400066419	Potato	cytosol	20.46	33.33
VIT_15s0021g02240.t01	Wine grape	mitochondrion	33.76	32.59
VIT_00s0229g00140.t01	Wine grape	mitochondrion	34.27	31.68
VIT_12s0028g00590.t01	Wine grape	cytosol	29.92	30.08
VIT_15s0021g02440.t01	Wine grape	extracellular, plasma membrane, plastid	11.51	27.78
VIT_11s0016g04290.t01	Wine grape	mitochondrion	25.32	21.95
VIT_15s0045g01170.t01	Wine grape	cytosol	7.16	19.18
VIT_13s0047g00370.t01	Wine grape	cytosol, peroxisome, plastid	5.63	18.18
Zm00001d007728_P001	Maize	cytosol	5.63	15.49

Protein Annotations

Gene3D:3.90.226.40	MapMan:4.2.7.4	ProteinID:CCB60787	ProteinID:CCB60787.1	InterPro:ClpP/crotonase-like_dom_sf	UniProt:F6I1H0
EMBL:FN596510	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003860
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015074	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
InterPro:HIBYL-CoA-H	PFAM:PF16113	PANTHER:PTHR43176	PANTHER:PTHR43176:SF6	SUPFAM:SSF52096	UniParc:UPI000210974E
ArrayExpress:VIT_15s0045g01190	EnsemblPlantsGene:VIT_15s0045g01190	EnsemblPlants:VIT_15s0045g01190.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:+:6661278..6718765

Molecular Weight (calculated)

43406.6 Da

IEP (calculated)

4.780

GRAVY (calculated)

-0.251

Length

391 amino acids

Sequence
(BLAST)

001: MYEPYSAVFG GERDFFSSTP SSGCDRALVV GDVFGLDVAA EGASNQAPLR AVLSDGNPWV MDSEGEKAIV DKPEAVEEMQ DREDSSSIWD ESNLLKFSKA
101: LGFAAEGVEG EILKLLLRLK TRRDQGKKKG SLGLTRFDRE VKKLEWSVFA MPETALGLFP DVGASYFLSR LPGFFGEYVG LTGARLDGAE MLACGLATHF
201: VPSTRLLLLE AALCKLDSGA PATISSILDE YSQQPHLKEN SAYHKLAVIN KCFSRRTIEE ILSTLEREAV NSADNWISAT IQSLQKASPT SLKISLRSIR
301: EGRLQDVGQC LTREYRMVCH VLQGEVSKDF FEGCRAILLD KDKNPKWEPS RLEQINESMV EQYFSKVDDE EWEDLKLPAK FTFSASLLAK L

Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.