Factsheet for VIT_13s0047g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
peroxisome 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0047g00380.t01	Wine grape	cytosol	24.86	75.0
Solyc05g032690.2.1	Tomato	cytosol, mitochondrion, nucleus	18.29	71.91
VIT_13s0047g00370.t01	Wine grape	cytosol, peroxisome, plastid	24.57	71.07
VIT_13s0047g00410.t01	Wine grape	cytosol	71.14	68.03
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	72.57	66.32
VIT_13s0047g00390.t01	Wine grape	endoplasmic reticulum, golgi	62.86	58.05
Solyc05g032680.2.1	Tomato	mitochondrion	16.57	51.33
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	52.0	49.19
KRH09309	Soybean	mitochondrion	55.14	48.49
VIT_15s0045g01170.t01	Wine grape	cytosol	16.0	38.36
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	41.71	37.34
VIT_04s0008g06610.t01	Wine grape	mitochondrion	41.43	35.63
VIT_00s0229g00140.t01	Wine grape	mitochondrion	41.14	34.04
VIT_15s0021g02240.t01	Wine grape	mitochondrion	39.14	33.83
VIT_12s0028g00590.t01	Wine grape	cytosol	36.57	32.9
VIT_15s0021g02440.t01	Wine grape	extracellular, plasma membrane, plastid	15.14	32.72
VIT_11s0016g04290.t01	Wine grape	mitochondrion	30.0	23.28

Protein Annotations

EntrezGene:100245360	wikigene:100245360	Gene3D:3.90.226.40	MapMan:4.2.7.4	ProteinID:CBI29135	ProteinID:CBI29135.3
InterPro:ClpP/crotonase-like_dom_sf	UniProt:D7TFA0	EMBL:FN595767	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:HIBYL-CoA-H	EntrezGene:LOC100245360	wikigene:LOC100245360	PFAM:PF16113	PANTHER:PTHR43176
PANTHER:PTHR43176:SF6	SUPFAM:SSF52096	UniParc:UPI0001BE3240	ArrayExpress:VIT_13s0047g00500	EnsemblPlantsGene:VIT_13s0047g00500	EnsemblPlants:VIT_13s0047g00500.t01
unigene:Vvi.20776	RefSeq:XP_002271707	RefSeq:XP_002271707.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:-:16652440..16684430

Molecular Weight (calculated)

39217.9 Da

IEP (calculated)

7.152

GRAVY (calculated)

0.056

Length

350 amino acids

Sequence
(BLAST)

001: MELSCRYLIT QILRKLEVYE NDPTVKLLIL KGQGKVFCSG GDVVAMVLSI YGGHWSFGES FYRKQITLDY LFATSEKTLV SLINGIVMGG GVGLSMNSRF
101: RVVTENTVFA MPEAQMGHFP DVGVSYFLSR LPGFFGEYLG LTGAQLNGTE MLACGLATHF VLSKDLLLLE TALSEAASDT STIPKVINRF ARKTFLKQDS
201: AFMRLEIINK CFSAKTVEEI LLLLQNEVAN GSDAWIIEAI SSMKSASPTS LKITLRSIRE ARMQELEDCL VRDYFICYHI IQGIHSIDFL EGSRTKLFEK
301: GKKPKWEPSK LELVSDEMVD HYFAKVEAPD IEHLRLPARK NIPKALESKL

Best Arabidopsis Sequence Match ( AT2G30660.2 )
(BLAST)

001: MISRLLQLFR AYEEDPSVKL VILKGQGRAF CAGGDVPPVV QNMVQGKWRL GADFFRDQYT LNYVMATYSK PQVSILNGIV MGAGAGVSIH GRFRIATENT
101: VFAMPETSLG LFPDVGASYF LSRLPGFFGE YVGLTGARLD GAELLACGLA THFVPSTRLT ALETDLCKVG SSDPSFVSTI LDAYTQHPHL KQKSAYHRLD
201: VIDRCFSKRT MEEIISALER ETTQELDDWS LTTIRALKKS SPSSLKISLR SIREGRLQGV GHCLTREYRM VCHVMKGDLS KDLVEGCRAI LIDKDRNPKW
301: EPRRLEDMKD SMVDQFFERV EEEERWEDLK LSPRNNLHAL RIAAKL

Arabidopsis Description

Probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMB0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.