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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • nucleus 1
  • mitochondrion 5
  • peroxisome 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, nucleus, peroxisome, plastid
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:peroxisome
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
PTS1:peroxisome
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g043690.1.1 Tomato cytosol 41.59 24.35
Solyc01g108790.1.1 Tomato nucleus 33.63 21.59
VIT_13s0047g00500.t01 Wine grape cytosol, peroxisome, plastid 51.33 16.57
VIT_13s0047g00410.t01 Wine grape cytosol 53.1 16.39
VIT_13s0047g00360.t01 Wine grape cytosol, peroxisome, plastid 52.21 15.4
Solyc07g044740.1.1 Tomato cytosol 16.81 14.62
Solyc01g108800.2.1 Tomato cytoskeleton, cytosol, peroxisome 48.67 14.51
Solyc01g080930.2.1 Tomato cytosol 48.67 14.36
Solyc07g044710.1.1 Tomato plastid 46.9 13.45
KRH09309 Soybean mitochondrion 46.02 13.07
Solyc07g044720.1.1 Tomato plastid 46.9 12.59
Solyc06g054520.1.1 Tomato cytosol 45.13 12.38
Solyc07g043680.2.1 Tomato cytosol 43.36 12.31
Solyc07g044730.2.1 Tomato endoplasmic reticulum, vacuole 46.02 12.18
Solyc12g011160.1.1 Tomato cytosol 40.71 11.98
Solyc01g090700.2.1 Tomato mitochondrion 42.48 11.88
VIT_13s0047g00390.t01 Wine grape endoplasmic reticulum, golgi 37.17 11.08
Solyc10g085630.1.1 Tomato mitochondrion 38.05 10.49
Solyc01g094090.2.1 Tomato cytosol 28.32 9.73
Solyc05g018410.1.1 Tomato plastid 18.58 7.0
VIT_13s0047g00370.t01 Wine grape cytosol, peroxisome, plastid 2.65 2.48
Solyc05g032690.2.1 Tomato cytosol, mitochondrion, nucleus 1.77 2.25
VIT_13s0047g00380.t01 Wine grape cytosol 0.88 0.86
Solyc07g022880.2.1 Tomato cytosol 0.88 0.69
Protein Annotations
EnsemblPlants:Solyc05g032680.2.1EnsemblPlantsGene:Solyc05g032680.2Gene3D:3.90.226.10GO:GO:0003674GO:GO:0003824GO:GO:0003860
GO:GO:0016787InterPro:HIBYL-CoA-HPANTHER:PTHR43176PANTHER:PTHR43176:SF6PFAM:PF16113UniParc:UPI00027660B9
UniProt:K4C049MapMan:35.1::::
Description
No Description!
Coordinates
chr5:+:45978082..45979870
Molecular Weight (calculated)
13371.2 Da
IEP (calculated)
10.421
GRAVY (calculated)
-0.544
Length
113 amino acids
Sequence
(BLAST)
001: MSNAIKSMKL ASPTSLKITL RSIREGRKQT LRQCLIREYN ISGHILLRSF NYNDFYEGGK AIFFTKDRKF KWEPSNLEKV HDAIVMQFSE VVHDDRWGYL
101: ELPQRQVFKT SKL
Best Arabidopsis Sequence Match ( AT2G30650.1 )
(BLAST)
001: MASHSQVLVE EKSSVRILTF NRPKQLNALS FHMVSRLLQL FLAYEEDPSV KLVVLKGQGR AFSAGGDIPP IVRDILQGKL IRGAHYFKVG YTLNYVLSTY
101: RKPQVSILNG IVMGGGAGLS TNGRFRIATE NTVFAMPETA LGLFPDVGAS YFLSRLPGFF GEYVGLTGAR LDGAEMLACG LATHFVPSIS LTALEAELYK
201: VGSSNQTFIS TILDAYAEYP HLNQHSSYHR LDVIDRCFSK RTVEEIFSAL EREVTQKPND WLLATIQALE KASPSCLKIS LRSIREGRLQ GVGQCLIREY
301: RMVCHVMKGD ISKDFVEGCR AVLIDKDRNP KWQPRRLEDV TDSMVDQYFE RVEDEEGWED LKFPPRNNLP ALAIAAKL
Arabidopsis Description
Probable 3-hydroxyisobutyryl-CoA hydrolase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEY5]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.