Factsheet for VIT_13s0047g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0047g00380.t01	Wine grape	cytosol	26.23	82.76
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	83.88	80.16
VIT_13s0047g00370.t01	Wine grape	cytosol, peroxisome, plastid	25.68	77.69
VIT_13s0047g00500.t01	Wine grape	cytosol, peroxisome, plastid	68.03	71.14
VIT_13s0047g00390.t01	Wine grape	endoplasmic reticulum, golgi	73.5	70.98
Solyc05g032690.2.1	Tomato	cytosol, mitochondrion, nucleus	16.94	69.66
KRH09309	Soybean	mitochondrion	58.47	53.77
Solyc05g032680.2.1	Tomato	mitochondrion	16.39	53.1
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	52.73	52.16
VIT_15s0045g01170.t01	Wine grape	cytosol	16.67	41.78
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	43.17	40.41
VIT_15s0021g02440.t01	Wine grape	extracellular, plasma membrane, plastid	16.67	37.65
VIT_15s0021g02240.t01	Wine grape	mitochondrion	39.89	36.05
VIT_04s0008g06610.t01	Wine grape	mitochondrion	39.89	35.87
VIT_12s0028g00590.t01	Wine grape	cytosol	37.43	35.22
VIT_00s0229g00140.t01	Wine grape	mitochondrion	40.44	34.99
VIT_11s0016g04290.t01	Wine grape	mitochondrion	29.51	23.95

Protein Annotations

EntrezGene:100253979	wikigene:100253979	Gene3D:3.90.226.40	MapMan:4.2.7.4	ProteinID:CCB52178	ProteinID:CCB52178.1
InterPro:ClpP/crotonase-like_dom_sf	UniProt:F6HIV3	EMBL:FN595767	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:HIBYL-CoA-H	EntrezGene:LOC100253979	wikigene:LOC100253979	PFAM:PF16113	PANTHER:PTHR43176
PANTHER:PTHR43176:SF6	SUPFAM:SSF52096	UniParc:UPI00021090C3	ArrayExpress:VIT_13s0047g00410	EnsemblPlantsGene:VIT_13s0047g00410	EnsemblPlants:VIT_13s0047g00410.t01
RefSeq:XP_002272004	RefSeq:XP_002272004.1	:	:	:	:

Description

No Description!

Coordinates

chr13:+:16553962..16562779

Molecular Weight (calculated)

40742.4 Da

IEP (calculated)

7.089

GRAVY (calculated)

-0.033

Length

366 amino acids

Sequence
(BLAST)

001: MEALPLGGHP SQKNLKEECP EWALISQISR NLEVYENDHL VKILILKGQG KAFCAGGDVV GILLSIINGH WSFGARFYKK QLTLDYLIAT STKPLVSLIN
101: GIVMGGGAGL SMNSMFRVVT ENTVFAMPEG QIGLFPDVGA SYFLSRLSGS FGEYLGLTGA RLDGSEMLAC GLATHFVLSK DLLLLENALS EVASSDALTI
201: SRVISAFSSK ISLKKDSAFR RLETINKCFS KGTVEEILST LENEVVNGDK WIVHAISSMK SASPTSLKIF LKLIREGRTK ELKDCLIQDY TIVCHLIRRT
301: FNRDFIEGSR AKLFEKDKQP KWEPSKLELV SDEMVDQYFQ KVDDADWEYL QLPERANIAK IWQSKL

Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.