Factsheet for VIT_12s0028g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g011160.1.1	Tomato	cytosol	73.52	74.48
Bra030657.1-P	Field mustard	cytosol	71.72	74.2
CDX86518	Canola	cytosol	72.24	73.37
CDY15584	Canola	cytosol	71.21	73.09
PGSC0003DMT400020300	Potato	cytosol	71.98	72.92
KRH46020	Soybean	vacuole	73.52	71.86
KRG98957	Soybean	nucleus	73.52	71.32
AT1G06550.1	Thale cress	cytosol	70.95	71.32
CDY49269	Canola	extracellular, mitochondrion, nucleus, plastid	39.85	68.89
EES03617	Sorghum	cytosol	65.3	66.32
PGSC0003DMT400079108	Potato	cytosol	58.35	65.99
Zm00001d043490_P001	Maize	cytosol, extracellular	65.04	65.89
TraesCS3A01G291100.1	Wheat	cytosol	64.27	64.94
TraesCS3B01G325800.1	Wheat	cytosol	64.01	64.68
Os01t0752200-01	Rice	plasma membrane	64.52	64.52
HORVU3Hr1G072100.2	Barley	cytosol	64.52	64.36
PGSC0003DMT400069137	Potato	cytosol, mitochondrion	46.79	64.31
Solyc06g054520.1.1	Tomato	cytosol	67.87	64.08
Bra030656.1-P	Field mustard	cytosol	59.13	63.71
TraesCS3D01G290900.1	Wheat	cytosol	54.5	63.66
CDY15583	Canola	cytosol	60.15	63.41
CDY15581	Canola	cytosol	44.22	63.0
Solyc07g043690.1.1	Tomato	cytosol	30.33	61.14
Solyc07g044710.1.1	Tomato	plastid	61.7	60.91
PGSC0003DMT400041136	Potato	cytosol	52.44	58.79
Solyc07g043680.2.1	Tomato	cytosol	59.38	58.04
PGSC0003DMT400057075	Potato	cytosol, plastid	59.64	58.0
Solyc07g044720.1.1	Tomato	plastid	62.47	57.72
Solyc07g044730.2.1	Tomato	endoplasmic reticulum, vacuole	61.7	56.21
GSMUA_Achr9P06670_001	Banana	plastid	66.84	55.08
CDX86519	Canola	extracellular	28.02	55.05
PGSC0003DMT400065713	Potato	cytosol, mitochondrion	33.68	54.58
PGSC0003DMT400054311	Potato	cytosol	22.11	54.09
Solyc07g044740.1.1	Tomato	cytosol	17.74	53.08
Bra030655.1-P	Field mustard	extracellular	20.05	43.58
VIT_13s0047g00380.t01	Wine grape	cytosol	12.85	43.1
VIT_04s0008g06610.t01	Wine grape	mitochondrion	41.39	39.56
VIT_15s0021g02240.t01	Wine grape	mitochondrion	41.13	39.51
VIT_00s0229g00140.t01	Wine grape	mitochondrion	42.93	39.48
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	36.5	38.38
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	37.28	37.86
VIT_15s0045g01170.t01	Wine grape	cytosol	14.14	37.67
VIT_13s0047g00410.t01	Wine grape	cytosol	35.22	37.43
VIT_13s0047g00500.t01	Wine grape	cytosol, peroxisome, plastid	32.9	36.57
VIT_13s0047g00390.t01	Wine grape	endoplasmic reticulum, golgi	34.96	35.88
VIT_15s0021g02440.t01	Wine grape	extracellular, plasma membrane, plastid	14.91	35.8
VIT_13s0047g00370.t01	Wine grape	cytosol, peroxisome, plastid	9.77	31.41
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	30.08	29.92
VIT_11s0016g04290.t01	Wine grape	mitochondrion	30.59	26.39

Protein Annotations

EntrezGene:100266026	wikigene:100266026	Gene3D:3.90.226.40	MapMan:50.3.1	ProteinID:CBI22092	ProteinID:CBI22092.3
InterPro:ClpP/crotonase-like_dom_sf	UniProt:E0CU26	EMBL:FN595235	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:HIBYL-CoA-H	EntrezGene:LOC100266026	wikigene:LOC100266026	PFAM:PF16113	PANTHER:PTHR43176
PANTHER:PTHR43176:SF2	SUPFAM:SSF52096	TIGR:TC56843	UniParc:UPI00015C9F61	ArrayExpress:VIT_12s0028g00590	EnsemblPlantsGene:VIT_12s0028g00590
EnsemblPlants:VIT_12s0028g00590.t01	unigene:Vvi.15503	RefSeq:XP_002279162	RefSeq:XP_002279162.2	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:1169309..1173371

Molecular Weight (calculated)

43890.8 Da

IEP (calculated)

6.142

GRAVY (calculated)

-0.362

Length

389 amino acids

Sequence
(BLAST)

001: MGQEGVKRDE QVVLGEEIGN IRVITLNRPR QLNVISSKVV SLLAEYLEKW EKDDKAELVI IKAIGRAFSA GGDLKMFYDG REPRDSCLEV VYRMYWLCYH
101: IHSYKKTQVA LVHGISMGGG ASLMVPMKFS VVTEKTVFAT PEATIGFHTD CGFSYMLSHL PGHLGEFIAL TGARLNGKEL VTVGLATHYV PSEKMPELEK
201: RLMCLNSGDR NAIKSAIEEF SLDVKVDEDS VLNKQSTINE CFSKDSVEEI IKSFETEARK EGNAWIGPML KSLKRSSPTG LKITLRSIRE GRNQTLAESL
301: KKEFRLTMNI LRTTISNDVY EGIRALTIDK DNAPKWDPPT LDKVNGEKVD IVFQPFKEEL ELQIPEKEEC RWDGKYEHSA YAQVTEEAK

Best Arabidopsis Sequence Match ( AT1G06550.1 )
(BLAST)

001: MAQEGQNIDE PVVIGEEKGS VRLTTLNRPR QLNVISPEVV FKLAEYLELW EKDDQTKLIL IKGTGRAFSA GGDLKVFYHG QESKDSCLEV VYRMYWLCYH
101: IHTYKKTQVS LVNGISMGGG AALMVPMKFS VVTEKTVFAT PEASFGFHTD CGFSYIHSRL PGHLGEFLAL TGARLNGKEL VAIGMATHFV PSGKLMDLEA
201: RLVSLDSGDA DVVQSTIEEF SEKVNLDKDS ILNKQSVINE CFSKESVKQI IQAFEAEASK DGNEWITPVI KGLKRSSPTG LKIVLQSIRE GRKQTLSDCL
301: KKEFRLTLNI LRKTISPDMY EGIRALTIDK DNSPKWNPAT LDEVDDEKIN SVFKLFEDDD IELQIPETEE NRWGGKYETS GYASVRG

Arabidopsis Description

3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.