CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 6
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46020	Soybean	vacuole	92.27	92.96
VIT_12s0028g00590.t01	Wine grape	cytosol	71.32	73.52
Bra030657.1-P	Field mustard	cytosol	66.58	71.01
Solyc12g011160.1.1	Tomato	cytosol	67.83	70.83
PGSC0003DMT400020300	Potato	cytosol	67.08	70.05
AT1G06550.1	Thale cress	cytosol	67.58	70.03
CDX86518	Canola	cytosol	66.58	69.71
CDY15584	Canola	cytosol	65.84	69.66
PGSC0003DMT400069137	Potato	cytosol, mitochondrion	47.38	67.14
EES03617	Sorghum	cytosol	62.59	65.54
Zm00001d043490_P001	Maize	cytosol, extracellular	62.34	65.1
CDY49269	Canola	extracellular, mitochondrion, nucleus, plastid	36.16	64.44
TraesCS3B01G325800.1	Wheat	cytosol	61.85	64.42
TraesCS3A01G291100.1	Wheat	cytosol	61.6	64.16
CDY15581	Canola	cytosol	43.64	64.1
TraesCS3D01G290900.1	Wheat	cytosol	53.12	63.96
PGSC0003DMT400079108	Potato	cytosol	54.61	63.66
Os01t0752200-01	Rice	plasma membrane	61.6	63.5
HORVU3Hr1G072100.2	Barley	cytosol	61.6	63.33
Bra030656.1-P	Field mustard	cytosol	55.86	62.05
Solyc07g044740.1.1	Tomato	cytosol	19.95	61.54
CDY15583	Canola	cytosol	56.36	61.25
Solyc07g043690.1.1	Tomato	cytosol	29.18	60.62
PGSC0003DMT400041136	Potato	cytosol	52.12	60.23
Solyc07g044710.1.1	Tomato	plastid	59.1	60.15
Solyc06g054520.1.1	Tomato	cytosol	61.6	59.95
Solyc07g043680.2.1	Tomato	cytosol	57.86	58.29
CDX86519	Canola	extracellular	28.68	58.08
PGSC0003DMT400057075	Potato	cytosol, plastid	57.86	58.0
Solyc07g044720.1.1	Tomato	plastid	60.6	57.72
Solyc07g044730.2.1	Tomato	endoplasmic reticulum, vacuole	61.35	57.61
PGSC0003DMT400054311	Potato	cytosol	21.7	54.72
PGSC0003DMT400065713	Potato	cytosol, mitochondrion	32.42	54.17
GSMUA_Achr9P06670_001	Banana	plastid	61.1	51.91
Bra030655.1-P	Field mustard	extracellular	19.7	44.13
KRH07311	Soybean	nucleus	41.65	43.15
KRH09309	Soybean	mitochondrion	39.65	39.95
KRH66607	Soybean	mitochondrion	38.4	35.4
KRH05370	Soybean	mitochondrion	35.91	35.38
KRH15650	Soybean	mitochondrion	35.41	34.89
KRH60315	Soybean	nucleus	28.18	27.7
KRH41609	Soybean	nucleus	27.93	27.45

Protein Annotations

EMBL:ACUP02010941	EMBL:BT097187	EnsemblPlants:KRG98957	EnsemblPlantsGene:GLYMA_18G109900	EntrezGene:100818188	Gene3D:3.90.226.40
GO:GO:0003674	GO:GO:0003824	GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H
PANTHER:PTHR43176	PANTHER:PTHR43176:SF2	PFAM:PF16113	ProteinID:KRG98957	ProteinID:KRG98957.1	SEG:seg
SUPFAM:SSF52096	UniParc:UPI0001B167AF	UniProt:C6THR1	MapMan:50.3.1	:	:

Description

hypothetical protein

Coordinates

chr18:-:12768212..12775591

Molecular Weight (calculated)

45038.9 Da

IEP (calculated)

5.396

GRAVY (calculated)

-0.246

Length

401 amino acids

Sequence
(BLAST)

001: MLSSLSSNSL HSIFTSMAPS SAVPDEQVVV GEEIEHVRVV TLNRPRQLNA ISPELVSQLA TYLEKWEKDE KAELVIIKGA GRAFCAGGDL RVFYDGRKIK
101: DACLEVVYRF YWLCYHISTY KKTQVALVHG ISMGGGAALM VPLKFSVVTE KTVFATPEAS FGFHTDCGFS YYHSRLPGYL GEYLALTGGR LSGKEIVAVG
201: VATHFVPYEK IVELEKRLIS LNSGDENAVR SVIEEFSSEV KLDEESILNK QSIINECFSK DSLEEIIKSL EAEAYKEGNG WIDAVLKGMK RSSPTALKIA
301: LRSVREGRNQ TLPECLKKEF RLTMNILRTT ISKDMYEGIR ALTIDKDNTP KWEPSSLDKV EDGKLDLIFQ PFEKNLELQI PESEEYRWDG KYENSAYALP
401: N

Best Arabidopsis Sequence Match ( AT1G06550.1 )
(BLAST)

001: MAQEGQNIDE PVVIGEEKGS VRLTTLNRPR QLNVISPEVV FKLAEYLELW EKDDQTKLIL IKGTGRAFSA GGDLKVFYHG QESKDSCLEV VYRMYWLCYH
101: IHTYKKTQVS LVNGISMGGG AALMVPMKFS VVTEKTVFAT PEASFGFHTD CGFSYIHSRL PGHLGEFLAL TGARLNGKEL VAIGMATHFV PSGKLMDLEA
201: RLVSLDSGDA DVVQSTIEEF SEKVNLDKDS ILNKQSVINE CFSKESVKQI IQAFEAEASK DGNEWITPVI KGLKRSSPTG LKIVLQSIRE GRKQTLSDCL
301: KKEFRLTLNI LRKTISPDMY EGIRALTIDK DNSPKWNPAT LDEVDDEKIN SVFKLFEDDD IELQIPETEE NRWGGKYETS GYASVRG

Arabidopsis Description

3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.