CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41609	Soybean	nucleus	96.81	96.81
Solyc07g022880.2.1	Tomato	cytosol	28.92	81.94
Bra010664.1-P	Field mustard	cytosol	38.73	77.07
CDY64934	Canola	cytosol	70.59	75.59
GSMUA_Achr6P00740_001	Banana	cytosol	67.89	73.47
GSMUA_Achr7P08560_001	Banana	cytosol	65.44	70.45
CDY01126	Canola	mitochondrion, plastid	72.79	70.38
AT4G13360.1	Thale cress	mitochondrion	72.55	70.31
Bra032700.1-P	Field mustard	plastid	72.06	69.5
VIT_11s0016g04290.t01	Wine grape	mitochondrion	76.72	69.4
CDX93011	Canola	plastid	71.57	69.03
CDX94817	Canola	mitochondrion, plastid	71.57	69.03
GSMUA_Achr7P13260_001	Banana	cytosol	62.75	68.45
Bra001946.1-P	Field mustard	plastid	70.83	68.32
TraesCS7D01G352500.3	Wheat	mitochondrion	68.87	67.87
AT3G24360.1	Thale cress	plastid	69.36	67.7
TraesCS7A01G370500.3	Wheat	mitochondrion, plastid	68.87	66.75
Solyc05g018410.1.1	Tomato	plastid	49.02	66.67
TraesCS7B01G257500.1	Wheat	mitochondrion, plastid	68.14	66.19
KXG20277	Sorghum	plastid	68.14	65.11
Os06t0594100-01	Rice	mitochondrion	68.38	64.29
HORVU7Hr1G085310.1	Barley	peroxisome	64.46	58.57
Zm00001d046456_P009	Maize	plastid	63.48	57.94
KRH07311	Soybean	nucleus	30.88	32.56
KRH46020	Soybean	vacuole	28.92	29.65
KRH15650	Soybean	mitochondrion	29.41	29.48
KRH09309	Soybean	mitochondrion	28.68	29.4
KRH05370	Soybean	mitochondrion	29.17	29.24
KRG98957	Soybean	nucleus	27.7	28.18
KRH66607	Soybean	mitochondrion	29.41	27.59

Protein Annotations

EntrezGene:100815230	Gene3D:3.90.226.40	MapMan:50.3.1	EMBL:ACUP02003358	InterPro:ClpP/crotonase-like_dom_sf	EnsemblPlantsGene:GLYMA_05G232600
GO:GO:0003674	GO:GO:0003824	GO:GO:0003860	GO:GO:0016787	InterPro:HIBYL-CoA-H	UniProt:I1K5T3
EnsemblPlants:KRH60315	ProteinID:KRH60315	ProteinID:KRH60315.1	PFAM:PF16113	PANTHER:PTHR43176	PANTHER:PTHR43176:SF5
SUPFAM:SSF52096	UniParc:UPI000233A9F0	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:41009642..41015826

Molecular Weight (calculated)

44599.5 Da

IEP (calculated)

6.727

GRAVY (calculated)

-0.104

Length

408 amino acids

Sequence
(BLAST)

001: MLVGAVRVQH FLSSLTFSRF QPSFSLRAFS AMAEEFVKGT VHQNGVAVIT LDRPKALNAM NLDMDVKYKS YLDEWESDPR VKCVLVDSSS PRAFCAGMDI
101: KGVVAEIQKD KNTPLVQKVF TAEYSLICKI SDYKKPYISF MDGITMGFGI GLSGHGRYRI ITERTVLAMP ENGIGLFPDV GFAHIAAQSP GEGSVGAYLG
201: LTGKRISTPS DAIYLGLGTH YVPSGKLGSF KEALLATNFS QDPHQDIKVL LARYESNPES EAQLKLLLPQ IVSTFGGNKS VTEIIEELKK HQSSTDPNVV
301: EWANEALQGL GKGAPFSLFL TYKYFSLVAS AVGNNDGELS TLSGVMKTEY RIALRSSLRH DFSEGVRAVL VAKDQNPKWK PSSLEEVDPS EVEAVFKPLG
401: PEVGELRV

Best Arabidopsis Sequence Match ( AT4G13360.1 )
(BLAST)

001: MIIIKTLSHR IFFPKFSQTF SSQFHQTLRF SISDRRKFSA MAGAGVDDFV KGNVFPNGVA LITLDRTKAL NAMNLDMDIK YKSFLDEWES DPRVKCVIVE
101: GSTSRAFCAG MDIKGVAAEI QKDKNTPLVQ KVFTAEYTLI CAIAAYKKPY ISLMDGITMG FGLGLSGHGR YRVITERTVL AMPENGIGLF PDVGFSYIAA
201: HSPGGGSVGA YLGLTGKRIS APSDALFVGL GTHYVPSEKL ASLKEAILSA NLSEDPNQDI QATLSKYSSN PESEAHLKSL LPHIESAFSS NKSIKETIEE
301: LKKYQQSTES SVVEWANEAL KGLEKGAPFS LYLTQKYFSN VACAKSKPEN ELATLNGVMK TEYRIALRSA LRGDFAEGVR AVLIDKDQNP KWNPTSIEEV
401: DENEVEALFK PLSPEVEELK V

Arabidopsis Description

3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9T0K7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.