CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93011	Canola	plastid	94.8	94.8
AT3G24360.1	Thale cress	plastid	82.27	83.25
CDY64934	Canola	cytosol	74.7	82.94
CDY01126	Canola	mitochondrion, plastid	77.78	77.96
Solyc07g022880.2.1	Tomato	cytosol	25.3	74.31
KRH60315	Soybean	nucleus	69.03	71.57
KRH41609	Soybean	nucleus	68.09	70.59
GSMUA_Achr6P00740_001	Banana	cytosol	60.52	67.9
GSMUA_Achr7P08560_001	Banana	cytosol	59.57	66.49
GSMUA_Achr7P13260_001	Banana	cytosol	58.63	66.31
Solyc05g018410.1.1	Tomato	plastid	45.15	63.67
VIT_11s0016g04290.t01	Wine grape	mitochondrion	67.85	63.64
TraesCS7D01G352500.3	Wheat	mitochondrion	61.47	62.8
TraesCS7A01G370500.3	Wheat	mitochondrion, plastid	61.94	62.23
TraesCS7B01G257500.1	Wheat	mitochondrion, plastid	61.47	61.9
KXG20277	Sorghum	plastid	61.94	61.36
Os06t0594100-01	Rice	mitochondrion	61.94	60.37
HORVU7Hr1G085310.1	Barley	peroxisome	58.39	55.01
Zm00001d046456_P009	Maize	plastid	57.21	54.14
CDY57769	Canola	peroxisome	31.68	35.92
CDY55104	Canola	cytosol	31.68	35.64
CDX86518	Canola	cytosol	31.21	34.46
CDY15584	Canola	cytosol	30.73	34.3
CDY49269	Canola	extracellular, mitochondrion, nucleus, plastid	17.49	32.89
CDY45439	Canola	plastid	30.26	32.41
CDY45442	Canola	mitochondrion	25.3	32.33
CDX97894	Canola	peroxisome	29.55	32.22
CDY62818	Canola	peroxisome	30.26	31.92
CDY31775	Canola	peroxisome	28.84	31.85
CDY31769	Canola	peroxisome	29.08	30.67
CDY15583	Canola	cytosol	26.71	30.62
CDX67831	Canola	mitochondrion	29.08	30.6
CDY23311	Canola	mitochondrion	29.55	30.49
CDY15581	Canola	cytosol	19.62	30.4
CDX98420	Canola	mitochondrion	28.84	30.35
CDY72221	Canola	mitochondrion	14.89	30.29
CDY39880	Canola	mitochondrion	29.31	30.24
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	10.64	30.2
CDX86519	Canola	extracellular	13.95	29.8

Protein Annotations

EnsemblPlants:CDX94817	EnsemblPlantsGene:GSBRNA2T00158307001	Gene3D:3.90.226.10	GO:A0A078E111	GO:GO:0003674	GO:GO:0003824
GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF5
PFAM:PF16113	ProteinID:CDX94817	ProteinID:CDX94817.1	SUPFAM:SSF52096	UniParc:UPI0004EE2506	MapMan:50.3.1

Description

BnaC03g43710D

Coordinates

chrLK031885:+:222319..225241

Molecular Weight (calculated)

46000.5 Da

IEP (calculated)

7.527

GRAVY (calculated)

-0.140

Length

423 amino acids

Sequence
(BLAST)

001: MIKTLGVASA RFFFSRHPPT TRNICVSSHS VSNRRKFSVM ASGSSGGGEE LVKGNVYPNG VAVITLDRPK ALNAMNLEMD LKYKSLLEEW ESDPKVKCVV
101: VEGSTPRAFC AGMDIKGVVA DILMDKHTPL VQKVFTAEYT LICKIAGYKK PYISLMDGIT MGFGLGLSGH GPYRVITERT VLAMPENGIG LFPDVGFSYI
201: AAHTPGRGSV GAYLGMTGRR ISTPSDAMFV GLGTHYVPSG KLASLKEAFL SADISKDPHQ DIQATLSEYS SGPDSEAYLK MMLPQIETAF SAIKSVKETI
301: EELKKYQQST DASVAEWAKE ALQGLGKGAP FSLYLTQKYF SKVACAMGKT DNEMATLNGV MKTEYRIALR AALRGDFSEG VRAVLVDKDQ NPKWKPASLD
401: EVEESEVNAL FKPLTPEVEE LNV

Best Arabidopsis Sequence Match ( AT3G24360.1 )
(BLAST)

001: MIKSLSLASA RIFFSRTSPS FLIPFSKLSV SHRRKFSVMA SGSDEFVKGN VYPNGVALIT LDRPKALNAM NLEMDLKYKS LLDEWEYDPG VKCVVVEGST
101: SRAFCAGMDI KGVVAEILMD KNTSLVQKVF TAEYSLICKI AGYRKPYISL MDGITMGFGL GLSGHGRYRV ITERTVLAMP ENGIGLFPDV GFSYIAAHSP
201: GEGSVGAYLG MTGRRISTPS DALFVGLGTH YVPSGKLGSL REAILSADLS KDPQQHIQAT LSNYSSDPET ESHLQMLLPQ IESAFSVSKS VKETIEELKK
301: FQQSSEASVA EWANEAVQGI EKGAPFSLYL THKYFSKVAC AKGKTNNAMA TLNGVMITEY RIALRSALRS DFTEGVRAVL TDKDQNPKWK PASLDEVDET
401: EVDALFMPLS PEFEELNV

Arabidopsis Description

3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.