Factsheet for Os06t0594100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
mitochondrion: 23027867
extracellular: 23159799
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G370500.3	Wheat	mitochondrion, plastid	82.95	85.51
TraesCS7D01G352500.3	Wheat	mitochondrion	81.57	85.51
KXG20277	Sorghum	plastid	84.1	85.48
TraesCS7B01G257500.1	Wheat	mitochondrion, plastid	82.03	84.76
Solyc07g022880.2.1	Tomato	cytosol	25.81	77.78
Zm00001d046456_P009	Maize	plastid	78.11	75.84
GSMUA_Achr7P08560_001	Banana	cytosol	65.21	74.67
HORVU7Hr1G085310.1	Barley	peroxisome	77.19	74.61
GSMUA_Achr6P00740_001	Banana	cytosol	64.75	74.54
Bra010664.1-P	Field mustard	cytosol	34.79	73.66
GSMUA_Achr7P13260_001	Banana	cytosol	60.37	70.05
CDY64934	Canola	cytosol	60.6	69.03
KRH60315	Soybean	nucleus	64.29	68.38
KRH41609	Soybean	nucleus	63.82	67.89
VIT_11s0016g04290.t01	Wine grape	mitochondrion	67.74	65.19
Bra032700.1-P	Field mustard	plastid	62.67	64.3
CDY01126	Canola	mitochondrion, plastid	62.44	64.22
AT4G13360.1	Thale cress	mitochondrion	61.52	63.42
AT3G24360.1	Thale cress	plastid	60.6	62.92
CDX94817	Canola	mitochondrion, plastid	60.37	61.94
CDX93011	Canola	plastid	60.37	61.94
Bra001946.1-P	Field mustard	plastid	59.68	61.23
Solyc05g018410.1.1	Tomato	plastid	41.47	60.0
Os01t0752200-01	Rice	plasma membrane	27.19	30.33
Os10t0552900-01	Rice	mitochondrion	28.11	29.68
Os12t0264500-02	Rice	endoplasmic reticulum	27.88	23.59

Protein Annotations

Gene3D:3.90.226.10	EntrezGene:4341424	MapMan:50.3.1	EMBL:AK072650	ProteinID:BAD32875.1	ProteinID:BAD33117.1
ProteinID:BAF19892.1	ProteinID:BAS98443.1	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:HIBYL-CoA-H	EnsemblPlantsGene:Os06g0594100	EnsemblPlants:Os06t0594100-01	PFAM:PF16113	PANTHER:PTHR43176
PANTHER:PTHR43176:SF5	UniProt:Q69UF2	SUPFAM:SSF52096	UniParc:UPI00003FF282	RefSeq:XP_015643955.1	SEG:seg

Description

Crotonase, core domain containing protein. (Os06t0594100-01);Similar to predicted protein. (Os06t0594100-02)

Coordinates

chr6:+:23343928..23350815

Molecular Weight (calculated)

46886.2 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.106

Length

434 amino acids

Sequence
(BLAST)

001: MGCSHVTMRA LLSRIHPPGP GSISTTSFLQ CPSSTAASAS KTLAPTLTFR RFAAMAAAAA EEFVKGRVTP NGVAVITLDR PKALNAMNLE MDLRYKAFLD
101: EWETNPSVKC VLVESSSPRA FSAGMDIKGV AAEIQKDKST PLVQKVFTAE YSLICKIHEY TKPYICLMDG VTMGFGIGLS GHGRYRIITE RTLLAMPENG
201: IGLFPDVGFA YIGAKAPGGG AVGSYLGMTG KRISSPADAL FFGLGTHYVP SANLGPLRES LLSANFTDDP HRDVESLLTK FKNEPESGPQ LDKFLPYIIS
301: SFGPDKSVAE SVEELKKCSQ SDDAAVAEWA NEALAGLKKG APFSLCLTQK HFSQVASAYR NNEHYLSKLA GVMKVEYRIA LRSSVRNDFV EGVRAVLVDK
401: DQNPKWKPAT LEDVDKGEVE SVFEPLAAEA ELNV

Best Arabidopsis Sequence Match ( AT4G13360.1 )
(BLAST)

001: MIIIKTLSHR IFFPKFSQTF SSQFHQTLRF SISDRRKFSA MAGAGVDDFV KGNVFPNGVA LITLDRTKAL NAMNLDMDIK YKSFLDEWES DPRVKCVIVE
101: GSTSRAFCAG MDIKGVAAEI QKDKNTPLVQ KVFTAEYTLI CAIAAYKKPY ISLMDGITMG FGLGLSGHGR YRVITERTVL AMPENGIGLF PDVGFSYIAA
201: HSPGGGSVGA YLGLTGKRIS APSDALFVGL GTHYVPSEKL ASLKEAILSA NLSEDPNQDI QATLSKYSSN PESEAHLKSL LPHIESAFSS NKSIKETIEE
301: LKKYQQSTES SVVEWANEAL KGLEKGAPFS LYLTQKYFSN VACAKSKPEN ELATLNGVMK TEYRIALRSA LRGDFAEGVR AVLIDKDQNP KWNPTSIEEV
401: DENEVEALFK PLSPEVEELK V

Arabidopsis Description

3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9T0K7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.