Factsheet for Os10t0552900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 16429260
mitochondrion: 19010998
mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 16429260 doi

KA Howell, AH Millar, J Whelan

ARC Centre of Excellence in Plant Energy Biology, CMS Building M310, University of Western Australia, 35 Stirling Hwy, Perth, WA 6009, Australia.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G213600.1	Wheat	mitochondrion	86.86	87.5
TraesCS1B01G224200.1	Wheat	mitochondrion	86.62	87.25
TraesCS1A01G210300.2	Wheat	mitochondrion	86.37	87.01
EER91964	Sorghum	mitochondrion	85.16	86.21
Zm00001d029860_P001	Maize	plasma membrane	83.94	84.98
GSMUA_Achr4P27030_001	Banana	mitochondrion	72.26	73.33
GSMUA_Achr4P30390_001	Banana	mitochondrion	72.02	67.43
VIT_04s0008g06610.t01	Wine grape	mitochondrion	62.53	63.15
Solyc10g085630.1.1	Tomato	mitochondrion	59.61	59.76
KRH05370	Soybean	mitochondrion	58.88	59.46
KRH15650	Soybean	mitochondrion	57.66	58.23
AT4G31810.1	Thale cress	mitochondrion	57.91	58.19
Bra010219.1-P	Field mustard	mitochondrion	56.93	57.07
CDY23311	Canola	mitochondrion	56.93	57.07
CDY39880	Canola	mitochondrion	56.69	56.83
PGSC0003DMT400043000	Potato	cytosol	24.57	51.79
Os01t0752200-01	Rice	plasma membrane	37.23	39.33
Os12t0264500-02	Rice	endoplasmic reticulum	39.17	31.38
Os06t0594100-01	Rice	mitochondrion	29.68	28.11

Protein Annotations

Gene3D:3.90.226.40	EntrezGene:4349332	MapMan:50.3.1	ProteinID:ABB47969.1	EMBL:AK068963	EMBL:AK099250
ProteinID:BAF27172.2	ProteinID:BAT11973.1	InterPro:ClpP/crotonase-like_dom_sf	ncoils:Coil	ProteinID:EEE51373.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0003860	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0016787	InterPro:HIBYL-CoA-H	EnsemblPlantsGene:Os10g0552900	EnsemblPlants:Os10t0552900-01	PFAM:PF16113
PANTHER:PTHR43176	PANTHER:PTHR43176:SF8	UniProt:Q336U0	SUPFAM:SSF52096	UniParc:UPI00005E1F95	RefSeq:XP_015612965.1
SEG:seg	:	:	:	:	:

Description

Crotonase, core domain containing protein. (Os10t0552900-01)

Coordinates

chr10:-:21700753..21704799

Molecular Weight (calculated)

44805.6 Da

IEP (calculated)

5.191

GRAVY (calculated)

-0.014

Length

411 amino acids

Sequence
(BLAST)

001: MPTLAAAAAA ARRAGGALRY AVLGGVRSLS SLQPSSSSSA AAAASEEVLV EGKASARAAV LNRPGHLNAL TTTMGARLNK FYMSWEDNPD IGFVMMKGSG
101: RAFCAGGDVV RLHQLISEGK LDECKDFFKT LYSFIYVLGT YLKPHVAILD GVTMGGGGGV SIPGTFRIVT DRTVFATPEV HIGFHPDAAA SFYLSHLTGH
201: VGEYLALTGE KLNGVDMIAL GLATHYSMSD RLNLVDERLA TLLTDDPSVI DTSLTHYGDL VYPDKSSIVH RLEVIDKCFS LETVEEIVDA MEIEAARLNE
301: DWSTLALKRL KEASPLALKV SLRSIREGRY QTLDECLVRE YRMSINGISE KFSHEFREGV RARLVEKDLA PKWDPPALEY VSADMVDSYF APLGEFEPEL
401: TLPTESREAF V

Best Arabidopsis Sequence Match ( AT4G31810.1 )
(BLAST)

001: MQTVKALRRV SEPLQWVRSV SYGRRFSALP NYSASDADFE DQVLVEGKAK SRAAILNNPS SLNALSAPMV GRLKRLYESW EENPAISFVL MKGSGKTFCS
101: GADVLSLYHS INEGNTEESK LFFENLYKFV YLQGTYLKPN IAIMDGVTMG CGGGISLPGM FRVATDKTVL AHPEVQIGFH PDAGASYYLS RLPGYLGEYL
201: ALTGQKLNGV EMIACGLATH YCLNARLPLI EERIGKLLTD DPAVIEDSLA QYGDLVYPDS SSVLHKIELI DKYFGLDTVE EIIEAMENEA ANSCNEWCKK
301: TLKQIKEASP LSLKITLQSI REGRFQTLDQ CLTHEYRISI CGVSKVVSGD FCEGIRARLV DKDFAPKWDP PRLEDVSKDM VDCYFTPASE LDDSDSELKL
401: PTAQREPYF

Arabidopsis Description

3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.