Factsheet for VIT_11s0016g04290.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g022880.2.1	Tomato	cytosol	26.16	81.94
Bra010664.1-P	Field mustard	cytosol	35.03	77.07
KRH60315	Soybean	nucleus	69.4	76.72
KRH41609	Soybean	nucleus	68.74	75.98
GSMUA_Achr6P00740_001	Banana	cytosol	62.97	75.33
CDY64934	Canola	cytosol	63.64	75.33
GSMUA_Achr7P08560_001	Banana	cytosol	61.64	73.35
TraesCS7D01G352500.3	Wheat	mitochondrion	65.63	71.5
GSMUA_Achr7P13260_001	Banana	cytosol	58.54	70.59
AT4G13360.1	Thale cress	mitochondrion	65.63	70.31
TraesCS7B01G257500.1	Wheat	mitochondrion, plastid	65.19	70.0
Bra032700.1-P	Field mustard	plastid	65.63	69.98
CDY01126	Canola	mitochondrion, plastid	65.41	69.91
TraesCS7A01G370500.3	Wheat	mitochondrion, plastid	65.19	69.83
AT3G24360.1	Thale cress	plastid	63.64	68.66
KXG20277	Sorghum	plastid	64.75	68.38
CDX94817	Canola	mitochondrion, plastid	63.64	67.85
Os06t0594100-01	Rice	mitochondrion	65.19	67.74
CDX93011	Canola	plastid	63.41	67.61
Bra001946.1-P	Field mustard	plastid	62.75	66.9
Solyc05g018410.1.1	Tomato	plastid	44.35	66.67
HORVU7Hr1G085310.1	Barley	peroxisome	61.2	61.47
Zm00001d046456_P009	Maize	plastid	59.87	60.4
VIT_13s0047g00380.t01	Wine grape	cytosol	9.76	37.93
VIT_15s0045g01170.t01	Wine grape	cytosol	11.09	34.25
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	26.16	31.89
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	26.61	31.33
VIT_15s0021g02240.t01	Wine grape	mitochondrion	27.49	30.62
VIT_12s0028g00590.t01	Wine grape	cytosol	26.39	30.59
VIT_15s0021g02440.t01	Wine grape	extracellular, plasma membrane, plastid	10.86	30.25
VIT_13s0047g00500.t01	Wine grape	cytosol, peroxisome, plastid	23.28	30.0
VIT_00s0229g00140.t01	Wine grape	mitochondrion	27.94	29.79
VIT_04s0008g06610.t01	Wine grape	mitochondrion	26.83	29.73
VIT_13s0047g00410.t01	Wine grape	cytosol	23.95	29.51
VIT_13s0047g00390.t01	Wine grape	endoplasmic reticulum, golgi	24.61	29.29
VIT_13s0047g00370.t01	Wine grape	cytosol, peroxisome, plastid	7.76	28.93
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	21.95	25.32

Protein Annotations

ArrayExpress:VIT_11s0016g04290	EMBL:FN595756	EnsemblPlants:VIT_11s0016g04290.t01	EnsemblPlantsGene:VIT_11s0016g04290	Gene3D:3.90.226.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176
PANTHER:PTHR43176:SF5	PFAM:PF16113	ProteinID:CCB51538	ProteinID:CCB51538.1	SEG:seg	SUPFAM:SSF52096
UniParc:UPI0002107F6A	UniProt:F6HH42	MapMan:50.3.1	:	:	:

Description

No Description!

Coordinates

chr11:+:3577637..3590813

Molecular Weight (calculated)

49558.7 Da

IEP (calculated)

7.094

GRAVY (calculated)

-0.127

Length

451 amino acids

Sequence
(BLAST)

001: MRSLVGASQL LNRSSTLFLF RGPKSHSQYL HFGKTSSSLR GLATMAAAAA EEFVKGNVHP NGVAVITLDR PKALNAMNLD MDIRYKKFLD EWEMDPMVKC
101: VLVEGSSSRA FSAGMDIKGV VAEIQKDKTT PLVQKCHFHF YIPCGDVKQI SARKQLSYVI EVFTAEYSLI CKISEYKKPY ISLMDGITMG FGIGLSGHGR
201: YRIVTERTLL AMPENGIGLF PDVGFAYIAA QSPGEGSVGA YLGMTGKRIS TSADALYVGL GTHYVPSGNL SSLKEALLTT SFSEDPHQDI RELLVKYSHD
301: PESEAQLKLL LPQIVSTFSA DKSVNEIIEE LKKHQLSTDA IVSEWAKEAL LGLGKGAPFS LCLTQKHFSR VALARGKNDS DLCSLSGVMK TEYRIALRSS
401: LRNDFAEGVR AVLVDKDQKP KWNPSSLEEV DLNEVEAVFE PLSQGTEELR V

Best Arabidopsis Sequence Match ( AT4G13360.1 )
(BLAST)

001: MIIIKTLSHR IFFPKFSQTF SSQFHQTLRF SISDRRKFSA MAGAGVDDFV KGNVFPNGVA LITLDRTKAL NAMNLDMDIK YKSFLDEWES DPRVKCVIVE
101: GSTSRAFCAG MDIKGVAAEI QKDKNTPLVQ KVFTAEYTLI CAIAAYKKPY ISLMDGITMG FGLGLSGHGR YRVITERTVL AMPENGIGLF PDVGFSYIAA
201: HSPGGGSVGA YLGLTGKRIS APSDALFVGL GTHYVPSEKL ASLKEAILSA NLSEDPNQDI QATLSKYSSN PESEAHLKSL LPHIESAFSS NKSIKETIEE
301: LKKYQQSTES SVVEWANEAL KGLEKGAPFS LYLTQKYFSN VACAKSKPEN ELATLNGVMK TEYRIALRSA LRGDFAEGVR AVLIDKDQNP KWNPTSIEEV
401: DENEVEALFK PLSPEVEELK V

Arabidopsis Description

3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9T0K7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.