Factsheet for VIT_13s0047g00370.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0045g01170.t01	Wine grape	cytosol	46.28	38.36
VIT_13s0047g00360.t01	Wine grape	cytosol, peroxisome, plastid	93.39	29.5
VIT_13s0047g00410.t01	Wine grape	cytosol	77.69	25.68
VIT_13s0047g00390.t01	Wine grape	endoplasmic reticulum, golgi	80.17	25.59
VIT_13s0047g00500.t01	Wine grape	cytosol, peroxisome, plastid	71.07	24.57
Solyc05g032690.2.1	Tomato	cytosol, mitochondrion, nucleus	14.88	20.22
VIT_13s0047g00380.t01	Wine grape	cytosol	16.53	17.24
KRH09309	Soybean	mitochondrion	55.37	16.83
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	45.45	14.86
VIT_15s0021g02440.t01	Wine grape	extracellular, plasma membrane, plastid	19.01	14.2
VIT_04s0008g06610.t01	Wine grape	mitochondrion	38.02	11.3
VIT_00s0229g00140.t01	Wine grape	mitochondrion	38.02	10.87
VIT_15s0021g02240.t01	Wine grape	mitochondrion	34.71	10.37
VIT_12s0028g00590.t01	Wine grape	cytosol	31.41	9.77
VIT_11s0016g04290.t01	Wine grape	mitochondrion	28.93	7.76
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	18.18	5.63
Solyc05g032680.2.1	Tomato	mitochondrion	2.48	2.65

Protein Annotations

ArrayExpress:VIT_13s0047g00370	EMBL:FN595767	EnsemblPlants:VIT_13s0047g00370.t01	EnsemblPlantsGene:VIT_13s0047g00370	Gene3D:3.90.226.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176
PANTHER:PTHR43176:SF6	PFAM:PF16113	ProteinID:CCB52181	ProteinID:CCB52181.1	SUPFAM:SSF52096	UniParc:UPI00021090C6
UniProt:F6HIV6	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr13:+:16304235..16312551

Molecular Weight (calculated)

13237.3 Da

IEP (calculated)

9.202

GRAVY (calculated)

0.157

Length

121 amino acids

Sequence
(BLAST)

001: MASRFLSHPE PNQISQILRN LEVYEKDPIV KLLILKGQGK TFCAGGDVVG MVLSINEGHW SFGASFYKKQ LTLDYLLATS TKPLVSLING IIMGGGAGLS
101: MNSMFRVVTE NTQFKLSCLN P

Best Arabidopsis Sequence Match ( AT2G30660.1 )
(BLAST)

001: MASQSQVLVE EKSSVRILTL NRPKQLNALC FNMISRLLQL FRAYEEDPSV KLVILKGQGR AFCAGGDVPP VVQNMVQGKW RLGADFFRDQ YTLNYVMATY
101: SKPQVSILNG IVMGAGAGVS IHGRFRIATE NTVFAMPETS LGLFPDVGAS YFLSRLPGFF GEYVGLTGAR LDGAELLACG LATHFVPSTR LTALETDLCK
201: VGSSDPSFVS TILDAYTQHP HLKQKSAYHR LDVIDRCFSK RTMEEIISAL ERETTQELDD WSLTTIRALK KSSPSSLKIS LRSIREGRLQ GVGHCLTREY
301: RMVCHVMKGD LSKDLVEGCR AILIDKDRNP KWEPRRLEDM KDSMVDQFFE RVEEEERWED LKLSPRNNLH ALRIAAKL

Arabidopsis Description

Probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMB0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.