CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60315	Soybean	nucleus	96.81	96.81
Solyc07g022880.2.1	Tomato	cytosol	28.92	81.94
Bra010664.1-P	Field mustard	cytosol	38.97	77.56
CDY64934	Canola	cytosol	69.85	74.8
GSMUA_Achr6P00740_001	Banana	cytosol	67.16	72.68
CDY01126	Canola	mitochondrion, plastid	72.06	69.67
GSMUA_Achr7P08560_001	Banana	cytosol	64.71	69.66
AT4G13360.1	Thale cress	mitochondrion	71.81	69.6
Bra032700.1-P	Field mustard	plastid	71.32	68.79
VIT_11s0016g04290.t01	Wine grape	mitochondrion	75.98	68.74
CDX93011	Canola	plastid	70.59	68.09
CDX94817	Canola	mitochondrion, plastid	70.59	68.09
GSMUA_Achr7P13260_001	Banana	cytosol	62.25	67.91
AT3G24360.1	Thale cress	plastid	69.12	67.46
TraesCS7D01G352500.3	Wheat	mitochondrion	68.38	67.39
Bra001946.1-P	Field mustard	plastid	69.85	67.38
Solyc05g018410.1.1	Tomato	plastid	48.77	66.33
TraesCS7A01G370500.3	Wheat	mitochondrion, plastid	68.38	66.27
TraesCS7B01G257500.1	Wheat	mitochondrion, plastid	67.65	65.71
KXG20277	Sorghum	plastid	67.65	64.64
Os06t0594100-01	Rice	mitochondrion	67.89	63.82
HORVU7Hr1G085310.1	Barley	peroxisome	64.22	58.35
Zm00001d046456_P009	Maize	plastid	62.75	57.27
KRH07311	Soybean	nucleus	30.88	32.56
KRH15650	Soybean	mitochondrion	29.9	29.98
KRH05370	Soybean	mitochondrion	29.66	29.73
KRH46020	Soybean	vacuole	28.92	29.65
KRH09309	Soybean	mitochondrion	28.92	29.65
KRG98957	Soybean	nucleus	27.45	27.93
KRH66607	Soybean	mitochondrion	29.41	27.59

Protein Annotations

EMBL:ACUP02004772	EnsemblPlants:KRH41609	EnsemblPlantsGene:GLYMA_08G040000	EntrezGene:100813160	Gene3D:3.90.226.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176
PANTHER:PTHR43176:SF5	PFAM:PF16113	ProteinID:KRH41609	ProteinID:KRH41609.1	SUPFAM:SSF52096	UniParc:UPI0002338541
UniProt:I1KQ42	MapMan:50.3.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:3152911..3158537

Molecular Weight (calculated)

44580.3 Da

IEP (calculated)

6.414

GRAVY (calculated)

-0.138

Length

408 amino acids

Sequence
(BLAST)

001: MLLGAVRVQH FLSSLTFSRF QPSFSLRAFS AMAEEFVKGS VHQNGVAVIT LDRPKALNAM NLDMDVKYKS YLDEWESDPR VKCVLVDSSS PRAFCAGMDI
101: KGVVAEIQKD KNTPLVQKVF TAEYSLICKI SDYKKPYISF MDGITMGFGI GLSGHGRYRI ITERTVLAMP ENGIGLFPDV GFAYIAAQSP GEGSVGAYLG
201: LTGKRISTPS DAIYAGLGTH YVPSGKLGSF KDALLATNFS QDPHQDIKVL LARYESNPES EAQLKLLLPQ LVSTFGGNKS VTEIIEELKK HQSSTDPNVV
301: EWANEALQGL RKGAPFSLFL TNKYFSSVAS AVGNNDGGLS TLSGVMETEY RIALRSSLRH DFSEGVRAVL VDKDQNPKWK PSSLEEIDPS EVEAVFKPLG
401: PEVGELRV

Best Arabidopsis Sequence Match ( AT4G13360.1 )
(BLAST)

001: MIIIKTLSHR IFFPKFSQTF SSQFHQTLRF SISDRRKFSA MAGAGVDDFV KGNVFPNGVA LITLDRTKAL NAMNLDMDIK YKSFLDEWES DPRVKCVIVE
101: GSTSRAFCAG MDIKGVAAEI QKDKNTPLVQ KVFTAEYTLI CAIAAYKKPY ISLMDGITMG FGLGLSGHGR YRVITERTVL AMPENGIGLF PDVGFSYIAA
201: HSPGGGSVGA YLGLTGKRIS APSDALFVGL GTHYVPSEKL ASLKEAILSA NLSEDPNQDI QATLSKYSSN PESEAHLKSL LPHIESAFSS NKSIKETIEE
301: LKKYQQSTES SVVEWANEAL KGLEKGAPFS LYLTQKYFSN VACAKSKPEN ELATLNGVMK TEYRIALRSA LRGDFAEGVR AVLIDKDQNP KWNPTSIEEV
401: DENEVEALFK PLSPEVEELK V

Arabidopsis Description

3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9T0K7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.