Factsheet for Solyc05g018410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
peroxisome 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64934	Canola	cytosol	64.0	50.39
GSMUA_Achr7P13260_001	Banana	cytosol	62.0	49.73
KRH60315	Soybean	nucleus	66.67	49.02
KRH41609	Soybean	nucleus	66.33	48.77
GSMUA_Achr6P00740_001	Banana	cytosol	59.67	47.48
AT4G13360.1	Thale cress	mitochondrion	65.0	46.32
GSMUA_Achr7P08560_001	Banana	cytosol	58.33	46.17
CDY01126	Canola	mitochondrion, plastid	64.33	45.73
Bra032700.1-P	Field mustard	plastid	64.33	45.63
AT3G24360.1	Thale cress	plastid	63.33	45.45
CDX94817	Canola	mitochondrion, plastid	63.67	45.15
CDX93011	Canola	plastid	62.67	44.44
VIT_11s0016g04290.t01	Wine grape	mitochondrion	66.67	44.35
Bra010664.1-P	Field mustard	cytosol	30.0	43.9
TraesCS7B01G257500.1	Wheat	mitochondrion, plastid	61.33	43.81
Bra001946.1-P	Field mustard	plastid	61.67	43.74
TraesCS7D01G352500.3	Wheat	mitochondrion	60.33	43.72
TraesCS7A01G370500.3	Wheat	mitochondrion, plastid	60.67	43.23
KXG20277	Sorghum	plastid	59.33	41.69
Solyc05g032690.2.1	Tomato	cytosol, mitochondrion, nucleus	12.33	41.57
Os06t0594100-01	Rice	mitochondrion	60.0	41.47
HORVU7Hr1G085310.1	Barley	peroxisome	61.0	40.76
Zm00001d046456_P009	Maize	plastid	57.33	38.48
Solyc07g022880.2.1	Tomato	cytosol	16.67	34.72
Solyc07g043690.1.1	Tomato	cytosol	18.0	27.98
Solyc01g094090.2.1	Tomato	cytosol	28.0	25.53
Solyc01g080930.2.1	Tomato	cytosol	32.33	25.33
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	31.33	24.8
Solyc01g090700.2.1	Tomato	mitochondrion	30.0	22.28
Solyc10g085630.1.1	Tomato	mitochondrion	30.33	22.2
Solyc07g044740.1.1	Tomato	cytosol	9.33	21.54
Solyc12g011160.1.1	Tomato	cytosol	27.33	21.35
Solyc07g044710.1.1	Tomato	plastid	28.0	21.32
Solyc07g044720.1.1	Tomato	plastid	29.67	21.14
Solyc07g043680.2.1	Tomato	cytosol	28.0	21.11
Solyc07g044730.2.1	Tomato	endoplasmic reticulum, vacuole	29.0	20.37
Solyc06g054520.1.1	Tomato	cytosol	26.33	19.17
Solyc01g108790.1.1	Tomato	nucleus	11.0	18.75
Solyc05g032680.2.1	Tomato	mitochondrion	7.0	18.58

Protein Annotations

EnsemblPlants:Solyc05g018410.1.1	EnsemblPlantsGene:Solyc05g018410.1	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF5	PFAM:PF16113
SUPFAM:SSF52096	UniParc:UPI0002767213	UniProt:K4BZ96	MapMan:50.3.1	:	:

Description

No Description!

Coordinates

chr5:-:20741151..20746674

Molecular Weight (calculated)

32884.8 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.013

Length

300 amino acids

Sequence
(BLAST)

001: MWSIIGLFNV FTAEYPIICK ISGYKKPYIS FMDGITMGFG IGLSGHGRYK VITERTVLAM PENGIGLFPD VGFSYIAAHG PGEGIVGAYL GLTGSRISTP
101: ADALYVGLGT HYVPSANLGT LKEALLATKF SEDPDEEIKQ LLTKYSSNPN SEPRLKSLLP RIISTFAGDK SIREILEELE HHQQSTDTLV AEWARDALQG
201: LSKGAPFSLR LTQKLFSKVA SARGETNNDL SRLTGVMRTE YRIALRSALR SDFAEGVRAV LVDKDQVCYD CINVSSFCTR KCHGPPIVIV THLMLLGNFR

Best Arabidopsis Sequence Match ( AT4G13360.1 )
(BLAST)

001: MIIIKTLSHR IFFPKFSQTF SSQFHQTLRF SISDRRKFSA MAGAGVDDFV KGNVFPNGVA LITLDRTKAL NAMNLDMDIK YKSFLDEWES DPRVKCVIVE
101: GSTSRAFCAG MDIKGVAAEI QKDKNTPLVQ KVFTAEYTLI CAIAAYKKPY ISLMDGITMG FGLGLSGHGR YRVITERTVL AMPENGIGLF PDVGFSYIAA
201: HSPGGGSVGA YLGLTGKRIS APSDALFVGL GTHYVPSEKL ASLKEAILSA NLSEDPNQDI QATLSKYSSN PESEAHLKSL LPHIESAFSS NKSIKETIEE
301: LKKYQQSTES SVVEWANEAL KGLEKGAPFS LYLTQKYFSN VACAKSKPEN ELATLNGVMK TEYRIALRSA LRGDFAEGVR AVLIDKDQNP KWNPTSIEEV
401: DENEVEALFK PLSPEVEELK V

Arabidopsis Description

3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9T0K7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.