Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004567 | Potato | extracellular | 28.2 | 81.82 |
| Solyc01g108800.2.1 | Tomato | cytoskeleton, cytosol, peroxisome | 79.11 | 79.95 |
| Solyc01g094090.2.1 | Tomato | cytosol | 65.54 | 76.29 |
| AT5G65940.1 | Thale cress | peroxisome | 69.97 | 70.9 |
| CDY57769 | Canola | peroxisome | 68.67 | 70.51 |
| Bra031802.1-P | Field mustard | cytosol | 68.93 | 70.21 |
| CDY55104 | Canola | cytosol | 68.93 | 70.21 |
| VIT_09s0002g07160.t01 | Wine grape | mitochondrion, peroxisome, plastid | 67.1 | 69.46 |
| AT2G30660.1 | Thale cress | peroxisome | 67.89 | 68.78 |
| KRH07311 | Soybean | nucleus | 68.93 | 68.22 |
| AT2G30650.1 | Thale cress | peroxisome | 65.54 | 66.4 |
| CDY31775 | Canola | peroxisome | 65.27 | 65.27 |
| CDX97894 | Canola | peroxisome | 65.54 | 64.69 |
| TraesCS1D01G194800.2 | Wheat | cytosol | 64.23 | 64.57 |
| GSMUA_Achr5P13900_001 | Banana | cytosol | 52.22 | 64.1 |
| Bra018395.1-P | Field mustard | cytosol | 62.4 | 64.08 |
| TraesCS1B01G206000.1 | Wheat | cytosol | 63.71 | 64.04 |
| EER91893 | Sorghum | cytosol | 64.49 | 63.99 |
| Bra018392.1-P | Field mustard | cytosol | 62.14 | 63.98 |
| CDY62818 | Canola | peroxisome | 66.32 | 63.34 |
| Zm00001d007726_P001 | Maize | peroxisome | 40.47 | 63.27 |
| TraesCS1A01G190800.1 | Wheat | plastid | 64.23 | 62.76 |
| Zm00001d007746_P002 | Maize | peroxisome | 31.07 | 62.63 |
| Bra039968.1-P | Field mustard | peroxisome | 65.01 | 62.41 |
| CDY31769 | Canola | peroxisome | 65.27 | 62.34 |
| CDY45442 | Canola | mitochondrion | 53.79 | 62.24 |
| GSMUA_Achr5P13870_001 | Banana | cytosol | 63.97 | 62.03 |
| Bra039975.1-P | Field mustard | peroxisome | 62.14 | 61.82 |
| CDY45439 | Canola | plastid | 62.92 | 61.01 |
| GSMUA_Achr8P14800_001 | Banana | cytosol | 62.92 | 60.71 |
| Zm00001d021132_P004 | Maize | extracellular | 63.97 | 60.64 |
| Zm00001d023779_P001 | Maize | extracellular | 60.57 | 60.1 |
| CDY71268 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 22.98 | 59.06 |
| HORVU1Hr1G049960.6 | Barley | mitochondrion | 64.23 | 58.29 |
| OQU84058 | Sorghum | mitochondrion | 62.4 | 58.29 |
| KXG29172 | Sorghum | peroxisome | 57.96 | 57.36 |
| Solyc05g032690.2.1 | Tomato | cytosol, mitochondrion, nucleus | 13.05 | 56.18 |
| Solyc07g043690.1.1 | Tomato | cytosol | 25.85 | 51.3 |
| VIT_15s0045g01190.t01 | Wine grape | cytosol, nucleus, peroxisome | 51.96 | 50.9 |
| Zm00001d007740_P001 | Maize | peroxisome | 49.61 | 50.4 |
| Zm00001d007732_P002 | Maize | extracellular | 37.34 | 50.18 |
| Solyc05g032680.2.1 | Tomato | mitochondrion | 14.36 | 48.67 |
| Os12t0264500-02 | Rice | endoplasmic reticulum | 63.71 | 47.56 |
| GSMUA_Achr5P13890_001 | Banana | nucleus | 19.32 | 46.25 |
| Solyc01g108790.1.1 | Tomato | nucleus | 21.15 | 46.02 |
| Zm00001d007728_P001 | Maize | cytosol | 16.45 | 44.37 |
| Solyc01g090700.2.1 | Tomato | mitochondrion | 44.65 | 42.33 |
| Solyc10g085630.1.1 | Tomato | mitochondrion | 44.65 | 41.71 |
| Solyc12g011160.1.1 | Tomato | cytosol | 41.25 | 41.15 |
| Solyc07g043680.2.1 | Tomato | cytosol | 41.25 | 39.7 |
| Solyc07g044710.1.1 | Tomato | plastid | 40.47 | 39.34 |
| Solyc06g054520.1.1 | Tomato | cytosol | 41.51 | 38.59 |
| Solyc07g044730.2.1 | Tomato | endoplasmic reticulum, vacuole | 40.99 | 36.77 |
| Solyc07g044720.1.1 | Tomato | plastid | 40.21 | 36.58 |
| Solyc07g022880.2.1 | Tomato | cytosol | 12.27 | 32.64 |
| Solyc05g018410.1.1 | Tomato | plastid | 25.33 | 32.33 |
| Solyc07g044740.1.1 | Tomato | cytosol | 10.97 | 32.31 |
Protein Annotations
| EnsemblPlants:Solyc01g080930.2.1 | EnsemblPlantsGene:Solyc01g080930.2 | Gene3D:3.90.226.40 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003860 |
| GO:GO:0016787 | InterPro:ClpP/crotonase-like_dom_sf | InterPro:HIBYL-CoA-H | PANTHER:PTHR43176 | PANTHER:PTHR43176:SF6 | PFAM:PF16113 |
| SUPFAM:SSF52096 | UniParc:UPI0002762776 | UniProt:K4AXY5 | MapMan:4.2.7.4 | MapMan:4.2.7.6.1 | : |
Description
No Description!
Coordinates
chr1:-:80268106..80278128
Molecular Weight (calculated)
42770.5 Da
IEP (calculated)
8.450
GRAVY (calculated)
-0.233
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQSSSNNGG TDQVLVEERA SVRTIILNRP KQLNALSFPM ISRLLELFHA SEGDSNVKMI ILKGNGRSFC AGGDVTAVVR NVRQGNWKLG ADYFREEFTL
101: NYLMATYSKP QVSILNGIVM GGGLGASVHG RFRVATEKSV CAMPETALGL FPDVGASYFY SRLPGFFGEY AGLTGARLDG AEMLACGLAT HFVPSERLPF
201: LEQALAKVNT SDPYVISTII SRFSDMPKLK AESPYHKMKI IDRCFSRRTI EEIISSLENE ALNKKDDWIS SAIQSLKKAS PTSLKISLRS IREGRLQGVG
301: SCLVREYRMV CHVLRGEFSK DFFEGCRALL IDKDKNPKWE PSRLELIRDD DVDRYFSKID DEDWEDLKLP PRSNLPPYAI AKL
101: NYLMATYSKP QVSILNGIVM GGGLGASVHG RFRVATEKSV CAMPETALGL FPDVGASYFY SRLPGFFGEY AGLTGARLDG AEMLACGLAT HFVPSERLPF
201: LEQALAKVNT SDPYVISTII SRFSDMPKLK AESPYHKMKI IDRCFSRRTI EEIISSLENE ALNKKDDWIS SAIQSLKKAS PTSLKISLRS IREGRLQGVG
301: SCLVREYRMV CHVLRGEFSK DFFEGCRALL IDKDKNPKWE PSRLELIRDD DVDRYFSKID DEDWEDLKLP PRSNLPPYAI AKL
001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL
Arabidopsis Description
CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.