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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, nucleus

Predictor Summary:
  • plastid 3
  • vacuole 1
  • mitochondrion 4
  • peroxisome 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, unclear
Any Predictor:cytosol, mitochondrion, peroxisome, plastid, vacuole
BaCelLo:plastid
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:cytosol, peroxisome
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
 nucleus: 25464976
unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g104680.2.1
Solyc01g104700.2.1
Solyc03g120690.2.1
Solyc04g007230.2.1
Solyc05g023800.2.1
Solyc05g055210.1.1
Solyc07g006130.1.1
Solyc07g055840.2.1
Solyc08g036600.1.1
Solyc08g076410.2.1
Solyc11g006660.1.1
Solyc12g010520.1.1
Solyc12g011000.1.1
Solyc12g044240.1.1
Solyc12g094450.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G42790.1 Solyc05g055210.1.1 AT1G12920.1 21798944
AT2G42790.1 Solyc07g006130.1.1 AT1G12920.1 21798944
AT2G42790.1 Solyc11g006660.1.1 AT1G12920.1 21798944
AT2G42790.1 Solyc12g010520.1.1 AT1G12920.1 21798944
AT2G42790.1 Solyc12g094450.1.1 AT1G76150.1 21798944
AT2G42790.1 Solyc08g076410.2.1 AT2G35500.1 21798944
AT2G42790.1 Solyc03g120690.2.1 AT3G16120.1 21798944
AT2G42790.1 Solyc12g044240.1.1 AT3G16120.1 21798944
AT2G42790.1 Solyc08g036600.1.1 AT3G56900.1 21798944
AT2G42790.1 Solyc07g055840.2.1 AT3G58750.1 21798944
AT2G42790.1 Solyc12g011000.1.1 AT3G58750.1 21798944
AT2G42790.1 Solyc01g104680.2.1 AT5G55190.1 21798944
AT2G42790.1 Solyc01g104700.2.1 AT5G55190.1 21798944
AT2G42790.1 Solyc05g023800.2.1 AT5G55190.1 21798944
AT3G58740.1 Solyc07g055840.2.1 AT2G42790.1 21798944
AT3G58740.1 Solyc12g011000.1.1 AT2G42790.1 21798944
AT3G58750.1 Solyc04g007230.2.1 AT1G25420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400044692 Potato plastid 96.48 96.48
Solyc12g011000.1.1 Tomato nucleus 87.08 86.58
CDX79848 Canola cytosol 37.38 86.43
CDY15651 Canola nucleus 29.35 84.27
VIT_12s0142g00610.t01 Wine grape plastid 83.95 83.79
CDY50821 Canola cytosol 81.6 81.76
Bra004720.1-P Field mustard cytosol 81.41 81.57
CDX79851 Canola cytosol 81.41 81.57
CDX98329 Canola cytosol, peroxisome, plastid 80.82 81.46
CDY49252 Canola cytosol 80.63 81.26
Bra007417.1-P Field mustard cytosol 80.43 81.07
AT2G42790.1 Thale cress cytosol 80.63 80.94
GSMUA_Achr10P... Banana mitochondrion 75.34 80.88
CDX67764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 80.23 80.71
CDX71925 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 80.63 80.63
AT3G58750.1 Thale cress endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 81.02 80.54
Bra003355.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 80.04 80.51
TraesCS5A01G413300.1 Wheat mitochondrion 77.89 79.13
TraesCS5D01G422000.1 Wheat unclear 77.89 79.13
Os02t0232400-01 Rice nucleus, plastid 77.3 79.0
TraesCS5B01G416700.1 Wheat golgi 77.69 78.93
Zm00001d016248_P001 Maize mitochondrion 77.5 78.73
EES04804 Sorghum mitochondrion 77.69 78.61
HORVU5Hr1G099820.5 Barley plastid 77.5 77.34
KRH14452 Soybean nucleus 76.52 76.52
KRH46090 Soybean endoplasmic reticulum, nucleus 75.73 75.44
KRG98876 Soybean nucleus, plastid 75.73 75.29
KRH73702 Soybean cytosol, plastid 75.34 75.2
Bra007416.1-P Field mustard cytosol 65.75 74.83
CDY49249 Canola cytosol 68.69 74.68
CDY00587 Canola cytosol 66.73 72.55
Bra014554.1-P Field mustard cytosol 66.34 72.13
AT3G58740.1 Thale cress cytosol 66.54 70.83
CDX71926 Canola cytosol 65.17 69.52
CDX89002 Canola endoplasmic reticulum, golgi 34.64 62.54
HORVU0Hr1G030280.2 Barley cytosol 19.96 56.67
CDY49250 Canola extracellular 8.22 51.85
VIT_06s0080g00770.t01 Wine grape cytosol 20.74 50.0
CDX71928 Canola cytosol 67.71 41.84
Solyc01g073740.2.1 Tomato plastid 19.96 21.52
Protein Annotations
Gene3D:1.10.230.10Gene3D:1.10.580.10MapMan:5.7.3.6.1InterPro:Citrate_synth-like_lrg_a-subInterPro:Citrate_synth-like_sm_a-subInterPro:Citrate_synthase
InterPro:Citrate_synthase_ASInterPro:Citrate_synthase_bac-typInterPro:Citrate_synthase_sfGO:GO:0003674GO:GO:0003824GO:GO:0006091
GO:GO:0006099GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016740GO:GO:0046912
InterPro:IPR016142InterPro:IPR016143UniProt:K4CGB7PFAM:PF00285PIRSF:PIRSF001369PRINTS:PR00143
ScanProsite:PS00480PANTHER:PTHR11739PANTHER:PTHR11739:SF4SUPFAM:SSF48256EnsemblPlantsGene:Solyc07g055840.2EnsemblPlants:Solyc07g055840.2.1
UniParc:UPI000276AC41SEG:seg::::
Description
Citrate synthase [Source:UniProtKB/TrEMBL;Acc:K4CGB7]
Coordinates
chr7:-:63757492..63765865
Molecular Weight (calculated)
56155.3 Da
IEP (calculated)
9.076
GRAVY (calculated)
-0.170
Length
511 amino acids
Sequence
(BLAST)
001: MERGKSSAVA RSRLSVITAH LAADYSASSH GLETSSVSAP TAAVSPPPNL KGALTIIDER TGKKYQVPVT EEGTVKATDF KKISTGYNDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDAGILR YRGYPIEELA ERSSFLEVAY LLMYGNLPSE NQLSDWEFAV SHHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSTLSVFHPD
201: ANPALRGQDI YNSKQVRDKQ IVRILGKAPV IAAAAYLRMA GRPPVLPSNN LSYAENFLYM LDSLGNRSYK PNPRLARVVD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT AIAGAVGALY GPLHGGANEA VLRMLSEIAS IDNIPEFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA EEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV ERKLYPNVDF YSGLIYRAIG FPTEFFPVLF AIPRMAGYLA HWRESLDDPD TKIMRPAQVY TGVWLRHYVP LRGRSPSTET DKFGQVSVSN
501: ATRRRLAGSG D
Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)
001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV
Arabidopsis Description
CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.