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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
MultiLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G030130.1
HORVU0Hr1G030280.2
HORVU1Hr1G050970.1
HORVU2Hr1G035400.1
HORVU2Hr1G059480.1
HORVU3Hr1G063860.1
HORVU3Hr1G073190.1
HORVU4Hr1G006500.2
HORVU4Hr1G052280.1
HORVU4Hr1G052310.1
HORVU5Hr1G027630.1
HORVU5Hr1G045070.3
HORVU5Hr1G085520.1
HORVU5Hr1G099820.5
HORVU6Hr1G064680.2
HORVU7Hr1G011400.2
HORVU7Hr1G046060.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G42790.1 HORVU2Hr1G035400.1 AT1G12920.1 21798944
AT2G42790.1 HORVU4Hr1G006500.2 AT1G12920.1 21798944
AT2G42790.1 HORVU2Hr1G059480.1 AT1G76150.1 21798944
AT2G42790.1 HORVU4Hr1G052280.1 AT1G76150.1 21798944
AT2G42790.1 HORVU4Hr1G052310.1 AT1G76150.1 21798944
AT2G42790.1 HORVU5Hr1G027630.1 AT1G76150.1 21798944
AT2G42790.1 HORVU5Hr1G085520.1 AT1G76150.1 21798944
AT2G42790.1 HORVU6Hr1G064680.2 AT1G76150.1 21798944
AT2G42790.1 HORVU7Hr1G046060.1 AT1G76150.1 21798944
AT2G42790.1 HORVU1Hr1G050970.1 AT2G35500.1 21798944
AT2G42790.1 HORVU3Hr1G073190.1 AT3G16120.1 21798944
AT2G42790.1 HORVU7Hr1G011400.2 AT3G16120.1 21798944
AT2G42790.1 HORVU5Hr1G045070.3 AT3G56900.1 21798944
AT2G42790.1 HORVU0Hr1G030280.2 AT3G58750.1 21798944
AT2G42790.1 HORVU5Hr1G099820.5 AT3G58750.1 21798944
AT2G42790.1 HORVU0Hr1G030130.1 AT5G55190.1 21798944
AT3G58740.1 HORVU0Hr1G030280.2 AT2G42790.1 21798944
AT3G58740.1 HORVU5Hr1G099820.5 AT2G42790.1 21798944
AT3G58750.1 HORVU3Hr1G063860.1 AT1G25420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d016248_P001 Maize mitochondrion 62.78 22.47
HORVU5Hr1G099820.5 Barley plastid 63.33 22.27
Os02t0232400-01 Rice nucleus, plastid 61.67 22.2
EES04804 Sorghum mitochondrion 61.67 21.98
GSMUA_Achr10P... Banana mitochondrion 56.67 21.43
AT3G58750.1 Thale cress endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 57.78 20.23
CDX98329 Canola cytosol, peroxisome, plastid 56.67 20.12
VIT_12s0142g00610.t01 Wine grape plastid 57.22 20.12
CDX67764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 56.67 20.08
Bra003355.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 56.67 20.08
Bra014554.1-P Field mustard cytosol 52.22 20.0
CDY00587 Canola cytosol 52.22 20.0
Solyc07g055840.2.1 Tomato nucleus, unclear 56.67 19.96
Bra007417.1-P Field mustard cytosol 56.11 19.92
CDY49252 Canola cytosol 56.11 19.92
Solyc12g011000.1.1 Tomato nucleus 56.67 19.84
AT2G42790.1 Thale cress cytosol 56.11 19.84
CDX79851 Canola cytosol 56.11 19.8
CDY50821 Canola cytosol 56.11 19.8
Bra004720.1-P Field mustard cytosol 56.11 19.8
CDX71925 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 56.11 19.77
PGSC0003DMT400020128 Potato plastid 56.11 19.65
CDX71926 Canola cytosol 51.67 19.42
CDY49249 Canola cytosol 50.56 19.36
PGSC0003DMT400044692 Potato plastid 54.44 19.18
KRH14452 Soybean nucleus 54.44 19.18
KRH73702 Soybean cytosol, plastid 53.33 18.75
AT3G58740.1 Thale cress cytosol 49.44 18.54
KRG98876 Soybean nucleus, plastid 51.11 17.9
KRH46090 Soybean endoplasmic reticulum, nucleus 50.56 17.74
Bra007416.1-P Field mustard cytosol 43.33 17.37
CDX71928 Canola cytosol 48.89 10.64
HORVU6Hr1G033980.6 Barley plastid 17.78 6.57
VIT_06s0080g00770.t01 Wine grape cytosol 6.11 5.19
CDX89002 Canola endoplasmic reticulum, golgi 6.11 3.89
CDY49250 Canola extracellular 1.11 2.47
CDX79848 Canola cytosol 1.11 0.9
HORVU5Hr1G099910.1 Barley cytosol 0.0 0.0
CDY15651 Canola nucleus 0.0 0.0
Protein Annotations
EnsemblPlants:HORVU0Hr1G030280.2EnsemblPlantsGene:HORVU0Hr1G030280Gene3D:1.10.580.10GO:GO:0003674GO:GO:0003824GO:GO:0016740
GO:GO:0046912InterPro:Citrate_synth-like_lrg_a-subInterPro:Citrate_synthaseInterPro:Citrate_synthase_sfInterPro:IPR016142ncoils:Coil
PANTHER:PTHR11739PANTHER:PTHR11739:SF4PFAM:PF00285SEG:segSUPFAM:SSF48256UniParc:UPI000B483AAB
UniProt:A0A287EA59MapMan:35.1::::
Description
No Description!
Coordinates
chrchrUn:+:173896119..173898180
Molecular Weight (calculated)
15732.8 Da
IEP (calculated)
4.656
GRAVY (calculated)
-0.101
Length
180 amino acids
Sequence
(BLAST)
001: EKNLPQMQEV XXXXXXXXXX XXXXXXXXXX XXXXXXXXLP LEKMTMVLXX XXXXXXXXXY DPGYLNTAPV RSSICYIDGD EGILRYRGYP IEEVAESSSF
101: VEVAYLLMYG NLPTQSQLAG WEFAISQHSA VPQGLLDIIQ SMPHDAHPMG VLASAMSTLS VFHPDANPAL RSDHLFRHQQ
Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)
001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV
Arabidopsis Description
CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.