Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79848 | Canola | cytosol | 40.86 | 94.12 |
| CDY15651 | Canola | nucleus | 32.42 | 92.7 |
| CDY50821 | Canola | cytosol | 91.55 | 91.37 |
| Bra004720.1-P | Field mustard | cytosol | 90.96 | 90.78 |
| CDX79851 | Canola | cytosol | 90.96 | 90.78 |
| AT3G58750.1 | Thale cress | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 86.05 | 85.21 |
| PGSC0003DMT400020128 | Potato | plastid | 82.51 | 81.71 |
| Solyc12g011000.1.1 | Tomato | nucleus | 81.93 | 81.13 |
| VIT_12s0142g00610.t01 | Wine grape | plastid | 81.34 | 80.86 |
| Solyc07g055840.2.1 | Tomato | nucleus, unclear | 80.94 | 80.63 |
| TraesCS5A01G413300.1 | Wheat | mitochondrion | 79.37 | 80.32 |
| TraesCS5B01G416700.1 | Wheat | golgi | 79.37 | 80.32 |
| Os02t0232400-01 | Rice | nucleus, plastid | 78.78 | 80.2 |
| TraesCS5D01G422000.1 | Wheat | unclear | 79.17 | 80.12 |
| PGSC0003DMT400044692 | Potato | plastid | 80.35 | 80.04 |
| GSMUA_Achr10P... | Banana | mitochondrion | 73.87 | 78.99 |
| EES04804 | Sorghum | mitochondrion | 78.19 | 78.81 |
| Zm00001d016248_P001 | Maize | mitochondrion | 77.8 | 78.73 |
| HORVU5Hr1G099820.5 | Barley | plastid | 78.39 | 77.93 |
| KRH14452 | Soybean | nucleus | 78.0 | 77.69 |
| KRH73702 | Soybean | cytosol, plastid | 77.41 | 76.95 |
| AT3G58740.1 | Thale cress | cytosol | 72.1 | 76.46 |
| KRH46090 | Soybean | endoplasmic reticulum, nucleus | 75.83 | 75.24 |
| KRG98876 | Soybean | nucleus, plastid | 75.25 | 74.51 |
| HORVU0Hr1G030280.2 | Barley | cytosol | 19.84 | 56.11 |
| VIT_06s0080g00770.t01 | Wine grape | cytosol | 21.02 | 50.47 |
| AT3G60100.2 | Thale cress | mitochondrion | 22.79 | 24.73 |
| AT2G44350.2 | Thale cress | mitochondrion | 22.59 | 24.26 |
| AT2G11270.1 | Thale cress | mitochondrion | 3.54 | 21.69 |
Protein Annotations
| Gene3D:1.10.230.10 | Gene3D:1.10.580.10 | MapMan:5.7.3.6.1 | EntrezGene:818879 | ProteinID:AAD21729.1 | ProteinID:AEC10169.1 |
| EMBL:AK221264 | EMBL:AK227008 | ArrayExpress:AT2G42790 | EnsemblPlantsGene:AT2G42790 | RefSeq:AT2G42790 | TAIR:AT2G42790 |
| RefSeq:AT2G42790-TAIR-G | EnsemblPlants:AT2G42790.1 | TAIR:AT2G42790.1 | EMBL:AY048214 | EMBL:AY124841 | Symbol:CSY3 |
| InterPro:Citrate_synth-like_lrg_a-sub | InterPro:Citrate_synth-like_sm_a-sub | InterPro:Citrate_synthase | InterPro:Citrate_synthase_AS | InterPro:Citrate_synthase_bac-typ | InterPro:Citrate_synthase_sf |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004108 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005777 | GO:GO:0006091 | GO:GO:0006099 | GO:GO:0006629 | GO:GO:0006635 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046912 |
| InterPro:IPR016142 | InterPro:IPR016143 | RefSeq:NP_181807.1 | PFAM:PF00285 | PIRSF:PIRSF001369 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00143 | ScanProsite:PS00480 | PANTHER:PTHR11739 | PANTHER:PTHR11739:SF4 |
| UniProt:Q0WUX6 | UniProt:Q9SJH7 | SUPFAM:SSF48256 | UniParc:UPI0000048643 | : | : |
Description
CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
Coordinates
chr2:-:17802841..17806073
Molecular Weight (calculated)
56178.4 Da
IEP (calculated)
7.786
GRAVY (calculated)
-0.210
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.