Factsheet for Bra004720.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002926.1-P
Bra003355.1-P
Bra007281.1-P
Bra007417.1-P
Bra015782.1-P
Bra016748.1-P
Bra017318.1-P
Bra027190.1-P
Bra035562.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42790.1	Bra016748.1-P	AT1G12920.1	21798944
AT2G42790.1	Bra015782.1-P	AT1G76150.1	21798944
AT2G42790.1	Bra017318.1-P	AT2G35500.1	21798944
AT2G42790.1	Bra027190.1-P	AT3G16120.1	21798944
AT2G42790.1	Bra007281.1-P	AT3G56900.1	21798944
AT2G42790.1	Bra003355.1-P	AT3G58750.1	21798944
AT2G42790.1	Bra007417.1-P	AT3G58750.1	21798944
AT2G42790.1	Bra002926.1-P	AT5G55190.1	21798944
AT2G42790.1	Bra035562.1-P	AT5G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79848	Canola	cytosol	43.33	100.0
CDX79851	Canola	cytosol	100.0	100.0
CDY15651	Canola	nucleus	34.9	100.0
AT2G42790.1	Thale cress	cytosol	90.78	90.96
Bra007417.1-P	Field mustard	cytosol	87.06	87.57
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	86.27	86.61
VIT_12s0142g00610.t01	Wine grape	plastid	81.96	81.64
PGSC0003DMT400020128	Potato	plastid	82.16	81.52
Solyc07g055840.2.1	Tomato	nucleus, unclear	81.57	81.41
Solyc12g011000.1.1	Tomato	nucleus	81.76	81.13
PGSC0003DMT400044692	Potato	plastid	80.59	80.43
Bra007416.1-P	Field mustard	cytosol	70.78	80.4
Os02t0232400-01	Rice	nucleus, plastid	78.24	79.8
GSMUA_Achr10P...	Banana	mitochondrion	73.73	78.99
KRH14452	Soybean	nucleus	79.02	78.86
TraesCS5A01G413300.1	Wheat	mitochondrion	77.65	78.73
TraesCS5B01G416700.1	Wheat	golgi	77.65	78.73
TraesCS5D01G422000.1	Wheat	unclear	77.65	78.73
Bra014554.1-P	Field mustard	cytosol	71.96	78.09
EES04804	Sorghum	mitochondrion	77.25	78.02
Zm00001d016248_P001	Maize	mitochondrion	76.67	77.73
KRH73702	Soybean	cytosol, plastid	77.25	76.95
HORVU5Hr1G099820.5	Barley	plastid	76.67	76.37
KRH46090	Soybean	endoplasmic reticulum, nucleus	75.49	75.05
KRG98876	Soybean	nucleus, plastid	74.71	74.12
HORVU0Hr1G030280.2	Barley	cytosol	19.8	56.11
VIT_06s0080g00770.t01	Wine grape	cytosol	21.76	52.36
Bra000351.1-P	Field mustard	cytosol	21.96	25.23
Bra037657.1-P	Field mustard	mitochondrion	22.16	23.79
Bra014513.1-P	Field mustard	mitochondrion	21.96	23.73

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	EnsemblPlantsGene:Bra004720	EnsemblPlants:Bra004720.1	EnsemblPlants:Bra004720.1-P
InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004108	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0006091	GO:GO:0006099	GO:GO:0006629	GO:GO:0006635
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912
InterPro:IPR016142	InterPro:IPR016143	UniProt:M4CKI5	PFAM:PF00285	PIRSF:PIRSF001369	PRINTS:PR00143
ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	UniParc:UPI000254798F	:

Description

AT2G42790 (E=4e-271) CSY3 | CSY3 (citrate synthase 3); citrate (SI)-synthase

Coordinates

chrA05:+:1514021..1516835

Molecular Weight (calculated)

56283.5 Da

IEP (calculated)

7.487

GRAVY (calculated)

-0.242

Length

510 amino acids

Sequence
(BLAST)

001: MEEISERVKA RLAVISAHLT SADPLESGSP AIERWTTSAD INPPPHGSLK GALTVVDERT GKKYQVPVSD DGTVKAVDLK KISMGKEDKG IKLYDPGYLN
101: TAPVRSSISY IDGDEGILRY RGYPIEEMAE NSTFLEVAYL LMYGNLPSES QLSDWEFAVS QHSAVPQGVL DIIQSMPHDA HPMGVLVSAM SALSIFHPDA
201: NPALRGQDIY DSKQVRDKQI IRIIGKAPTI AAAAYLRMAG RPPVLPSGSL SYAENFLYML DSMGNRSYKP NPRLARVLDI LFILHAEHEM NCSTAAARHL
301: ASSGVDVYTA VAGAVGALYG PLHGGANEAV LKMLSEIGSV DNIPEFIEGV KNRKRKMSGF GHRVYKNYDP RAKVIKKLAD EVFSIVGRDP LIEVAVALEK
401: AALSDDYFVK RKLYPNVDFY SGLIYRAMGF PPEFFTVLFA IPRMAGYLSH WKESLDDPDT KIMRPQQVYT GVWLRHYTPV KERDEPKESD KLSQVSTSNA
501: SRRRLAGSSV

Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)

001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV

Arabidopsis Description

CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.