CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
vacuole 2
cytosol 3
peroxisome 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, peroxisome
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90825
KRG94758
KRG95023
KRG98876
KRH06769
KRH08442
KRH09439
KRH09878
KRH14452
KRH23441
KRH35947
KRH37825
KRH38906
KRH46090
KRH49412
KRH51640
KRH52483
KRH52484
KRH52485
KRH60966
KRH61808
KRH61809
KRH61811
KRH66657
KRH70101
KRH73702
KRH74369

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42790.1	KRG94758	AT1G12920.1	21798944
AT2G42790.1	KRH06769	AT1G12920.1	21798944
AT2G42790.1	KRH08442	AT1G12920.1	21798944
AT2G42790.1	KRH09439	AT1G12920.1	21798944
AT2G42790.1	KRH38906	AT1G12920.1	21798944
AT2G42790.1	KRH70101	AT1G12920.1	21798944
AT2G42790.1	KRH51640	AT1G76150.1	21798944
AT2G42790.1	KRH60966	AT1G76150.1	21798944
AT2G42790.1	KRH49412	AT2G35500.1	21798944
AT2G42790.1	KRH74369	AT2G35500.1	21798944
AT2G42790.1	KRH09878	AT3G16120.1	21798944
AT2G42790.1	KRH23441	AT3G16120.1	21798944
AT2G42790.1	KRG95023	AT3G56900.1	21798944
AT2G42790.1	KRH37825	AT3G56900.1	21798944
AT2G42790.1	KRH66657	AT3G56900.1	21798944
AT2G42790.1	KRG98876	AT3G58750.1	21798944
AT2G42790.1	KRH14452	AT3G58750.1	21798944
AT2G42790.1	KRH46090	AT3G58750.1	21798944
AT2G42790.1	KRH73702	AT3G58750.1	21798944
AT2G42790.1	KRH52483	AT5G55190.1	21798944
AT2G42790.1	KRH52484	AT5G55190.1	21798944
AT2G42790.1	KRH52485	AT5G55190.1	21798944
AT2G42790.1	KRH61808	AT5G55190.1	21798944
AT2G42790.1	KRH61809	AT5G55190.1	21798944
AT2G42790.1	KRH61811	AT5G55190.1	21798944
AT3G58740.1	KRG98876	AT2G42790.1	21798944
AT3G58740.1	KRH14452	AT2G42790.1	21798944
AT3G58740.1	KRH46090	AT2G42790.1	21798944
AT3G58740.1	KRH73702	AT2G42790.1	21798944
AT3G58750.1	KRG90825	AT1G25420.1	21798944
AT3G58750.1	KRH35947	AT1G25420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14452	Soybean	nucleus	94.14	94.32
KRH46090	Soybean	endoplasmic reticulum, nucleus	84.38	84.21
CDX79848	Canola	cytosol	36.13	83.71
KRG98876	Soybean	nucleus, plastid	83.4	83.07
CDY15651	Canola	nucleus	28.32	81.46
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	77.34	77.95
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	77.15	77.76
CDX98329	Canola	cytosol, peroxisome, plastid	76.95	77.71
AT2G42790.1	Thale cress	cytosol	76.95	77.41
Bra004720.1-P	Field mustard	cytosol	76.95	77.25
CDX79851	Canola	cytosol	76.95	77.25
CDY49252	Canola	cytosol	76.37	77.12
CDY50821	Canola	cytosol	76.76	77.06
VIT_12s0142g00610.t01	Wine grape	plastid	76.95	76.95
GSMUA_Achr10P...	Banana	mitochondrion	71.48	76.89
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.56	76.71
Bra007417.1-P	Field mustard	cytosol	75.78	76.53
AT3G58750.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	76.37	76.07
Solyc07g055840.2.1	Tomato	nucleus, unclear	75.2	75.34
Solyc12g011000.1.1	Tomato	nucleus	75.59	75.29
TraesCS5A01G413300.1	Wheat	mitochondrion	73.63	74.95
TraesCS5B01G416700.1	Wheat	golgi	73.63	74.95
PGSC0003DMT400020128	Potato	plastid	75.2	74.9
Os02t0232400-01	Rice	nucleus, plastid	73.05	74.8
TraesCS5D01G422000.1	Wheat	unclear	73.44	74.75
PGSC0003DMT400044692	Potato	plastid	74.41	74.56
EES04804	Sorghum	mitochondrion	73.44	74.46
Zm00001d016248_P001	Maize	mitochondrion	73.05	74.35
HORVU5Hr1G099820.5	Barley	plastid	72.66	72.66
Bra007416.1-P	Field mustard	cytosol	63.67	72.61
CDY49249	Canola	cytosol	66.21	72.13
Bra014554.1-P	Field mustard	cytosol	64.45	70.21
CDY00587	Canola	cytosol	64.26	70.0
AT3G58740.1	Thale cress	cytosol	64.65	68.96
CDX71926	Canola	cytosol	63.09	67.43
CDX89002	Canola	endoplasmic reticulum, golgi	33.79	61.13
HORVU0Hr1G030280.2	Barley	cytosol	18.75	53.33
VIT_06s0080g00770.t01	Wine grape	cytosol	20.51	49.53
CDY49250	Canola	extracellular	7.81	49.38
CDX71928	Canola	cytosol	64.84	40.15
KRH13859	Soybean	mitochondrion	22.07	23.94
KRH43565	Soybean	mitochondrion	22.07	23.94

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	EntrezGene:100784332	MapMan:5.7.3.6.1	EMBL:ACUP02001288	InterPro:Citrate_synth-like_lrg_a-sub
InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf	EnsemblPlantsGene:GLYMA_02G288500
GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	UniProt:I1JJ62	InterPro:IPR016142	InterPro:IPR016143
EnsemblPlants:KRH73702	ProteinID:KRH73702	ProteinID:KRH73702.1	ProteinID:KRH73703.1	PFAM:PF00285	PIRSF:PIRSF001369
PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	UniParc:UPI0002337260
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:46857783..46863525

Molecular Weight (calculated)

56533.1 Da

IEP (calculated)

9.051

GRAVY (calculated)

-0.156

Length

512 amino acids

Sequence
(BLAST)

001: MSSNSDAAAA TVHAHGRLAM LAAHLLPSQL THHGALHPLH LSSQLPPPPN LAGTLTVVDE RTGKKYQLHV SKEGTVKASE FKKILTGKND KGLKLYDPGY
101: LNTAPVRSTI SYIDGDEGIL RYRGYPIEEL ADKSTFTEVS YLIMYGSLPS ESQLAEWEFA ISQHSAVPQG VLDMIQSMPH DAHPMGVLVN AMSALSVFHP
201: DANPALRGLD IYDSKQIRDK QITRVIGKIT TIAAAVYLRM AGRPPVLPSN LLSYTENFLY MLDSFGNRSY KPNPQLTRAL DIIFILHAEH EMNCSTSAVR
301: HLASSGVDVY TAIAGAVGAL YGPLHGGANE AVLKMLSEIG TVQNIPEFIE GVKARKRKLS GFGHRVYKNY DPRAKVLRKL AEEVFSIVGR DPLIEVAVSL
401: EKIALSDEYF IKRKLYPNVD FYSGLIYRAM GFPPEYFTVL FAIPRMAGYL AHWRESLDDP DTKILRPQQV YVGEWLRHYT QVNVRTTSSD ADKLGEVAIS
501: NASKRRLAGS GV

Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)

001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV

Arabidopsis Description

CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.