CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66657	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	95.76	95.76
VIT_08s0040g00290.t01	Wine grape	extracellular	40.4	79.04
AT3G56900.1	Thale cress	cytosol	69.42	69.57
Bra007281.1-P	Field mustard	cytosol	66.07	66.97
CDY27182	Canola	cytosol	65.85	66.74
CDX72100	Canola	cytosol	66.74	66.74
KRH37825	Soybean	cytosol, endoplasmic reticulum, plastid, vacuole	22.54	58.05
GSMUA_Achr8P26090_001	Banana	cytosol	56.25	57.01
TraesCS5D01G152200.1	Wheat	cytosol	53.57	54.3
TraesCS5B01G138600.2	Wheat	cytosol	53.57	54.3
PGSC0003DMT400046078	Potato	extracellular, plasma membrane	58.48	53.8
Os12t0129400-01	Rice	cytosol	52.9	53.5
TraesCS5A01G138500.1	Wheat	cytosol	52.23	53.42
Zm00001d023264_P004	Maize	cytosol	52.9	53.26
KXG22856	Sorghum	cytosol	52.46	52.93
Os11t0132700-01	Rice	cytosol, nucleus	52.23	52.82
Solyc08g036600.1.1	Tomato	nucleus	23.21	51.23
HORVU5Hr1G045070.3	Barley	plastid	50.45	45.11
Zm00001d023266_P001	Maize	cytosol, golgi, plastid	14.29	44.44
Os12t0131300-01	Rice	cytosol	8.04	36.36
Os12t0129650-01	Rice	cytosol	3.12	18.42

Protein Annotations

EntrezGene:100808599	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.8	UniProt:A0A0R0EL31	EMBL:ACUP02012070	EnsemblPlantsGene:GLYMA_19G125000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150
InterPro:IPR001680	InterPro:IPR015943	EnsemblPlants:KRG95023	ProteinID:KRG95023	ProteinID:KRG95023.1	PFAM:PF00400
PANTHER:PTHR14494	SMART:SM00320	SUPFAM:SSF82171	UniParc:UPI0003DE7555	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat

Description

hypothetical protein

Coordinates

chr19:-:38303433..38309867

Molecular Weight (calculated)

48951.9 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.161

Length

448 amino acids

Sequence
(BLAST)

001: MASFPPPGSL TLCEVNRDLI TVDALSDDRA NQTYGKILGL VFSPVPFHNL ENDASDQEGP TATETAAGES VQRKCPVALL QGLVNNYLGR LFYPNDVHLL
101: PEVDLQGVSW HPNKHIIAFI SAPTQVLVRD YQESEGKDPS ILTNESQRDA RVLEWRPNGG KMLAVGCKGG ICMWAASYPG NAASVRSGAA SFLGGLSRSS
201: GNRYILVDFL RSPYDEHVSA LSWSPDGRYL ASASYESSSF TVWDFAQGVG TPIRRGLGGI SMLKWSPTGD YFFASKFDGT FYLWETNTWT SEQWSSTSGF
301: VKGATWDPDG RMILLAFSES STLGSIHFAS KPPSLDAHLL PVDLPEILSL TGSQGIEKIA WDNSGERLAV SFKGGDDMYR GLIAIYDTRR TPLISTSLIG
401: FIRGPGDKPK PISFSFHGKF KQGPLLSVCW SSGFCCTYPL LFRSHMLP

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.