CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27182	Canola	cytosol	95.98	97.29
AT3G56900.1	Thale cress	cytosol	88.39	88.59
VIT_08s0040g00290.t01	Wine grape	extracellular	38.17	74.67
KRG95023	Soybean	cytosol, nucleus	66.74	66.74
KRH66657	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	64.73	64.73
GSMUA_Achr8P26090_001	Banana	cytosol	56.92	57.69
TraesCS5B01G138600.2	Wheat	cytosol	54.91	55.66
TraesCS5D01G152200.1	Wheat	cytosol	54.91	55.66
TraesCS5A01G138500.1	Wheat	cytosol	54.24	55.48
Os12t0129400-01	Rice	cytosol	54.02	54.63
Zm00001d023264_P004	Maize	cytosol	53.57	53.93
Os11t0132700-01	Rice	cytosol, nucleus	53.12	53.72
KXG22856	Sorghum	cytosol	52.9	53.38
Solyc08g036600.1.1	Tomato	nucleus	23.44	51.72
PGSC0003DMT400046078	Potato	extracellular, plasma membrane	55.36	50.92
HORVU5Hr1G045070.3	Barley	plastid	52.23	46.71
KRH37825	Soybean	cytosol, endoplasmic reticulum, plastid, vacuole	17.86	45.98
Zm00001d023266_P001	Maize	cytosol, golgi, plastid	14.51	45.14
Os12t0131300-01	Rice	cytosol	8.93	40.4
Os12t0129650-01	Rice	cytosol	3.79	22.37

Protein Annotations

EnsemblPlants:CDX72100	EnsemblPlantsGene:GSBRNA2T00155900001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR14494
ProteinID:CDX72100	ProteinID:CDX72100.1	SEG:seg	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE676D
MapMan:23.5.1.1.1.8	:	:	:	:	:

Description

BnaC08g27740D

Coordinates

chrLK031795:-:2380965..2383870

Molecular Weight (calculated)

48863.8 Da

IEP (calculated)

5.303

GRAVY (calculated)

-0.120

Length

448 amino acids

Sequence
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQSLSDDRA QETYGKILGM VFSPVSFEAG PGSLEENEAQ ESGDKGLVER KGLVATLQGM VADSLQQILR PIDVSLLSEI
101: DLQRVSWHQG KHIIAFISGA NQVSIRDYED KDEKEPCLLT SDSQRSVKAL EWRPNGGKSI SVACWGGICI WTASYPGNMA LVRSGGSSLR GSLSRGSGAR
201: WILVDFLRCQ NDEQISALSW SPCGRYPENV YAILFSSYDS SSFTIWDVSQ GAGTPIRRGL GGISMLKWSP TGDYFFASRF DGTFCLWETN TWTSEPWSLS
301: TGSGSVTGAL WDPEGRFILI SFSKSLTLGS VHFSSKPPSL DAHLLPVELP ELASMTGSEG IKKIAWDASG ERLVVSYKGG DENYKGLIAI YDIRRTPIVS
401: ASLVGFIRGP GENPEALSLS FHDKFKQGPL LSVCWSTGFC CTYPLIFR

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.