Factsheet for Solyc08g036600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	peroxisome, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046078	Potato	extracellular, plasma membrane	95.07	39.63
Os12t0131300-01	Rice	cytosol	18.23	37.37
AT3G56900.1	Thale cress	cytosol	53.2	24.16
GSMUA_Achr8P26090_001	Banana	cytosol	51.72	23.76
Bra007281.1-P	Field mustard	cytosol	51.23	23.53
CDY27182	Canola	cytosol	51.23	23.53
CDX72100	Canola	cytosol	51.72	23.44
KRH66657	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	51.72	23.44
KRG95023	Soybean	cytosol, nucleus	51.23	23.21
Zm00001d023264_P004	Maize	cytosol	48.28	22.02
KXG22856	Sorghum	cytosol	46.31	21.17
Os11t0132700-01	Rice	cytosol, nucleus	45.32	20.77
TraesCS5B01G138600.2	Wheat	cytosol	44.83	20.59
TraesCS5A01G138500.1	Wheat	cytosol	44.34	20.55
Os12t0129400-01	Rice	cytosol	44.83	20.54
TraesCS5D01G152200.1	Wheat	cytosol	44.34	20.36
Os12t0129650-01	Rice	cytosol	6.4	17.11
HORVU5Hr1G045070.3	Barley	plastid	39.9	16.17
KRH37825	Soybean	cytosol, endoplasmic reticulum, plastid, vacuole	3.45	4.02
VIT_08s0040g00290.t01	Wine grape	extracellular	2.96	2.62
Zm00001d023266_P001	Maize	cytosol, golgi, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc08g036600.1.1	EnsemblPlantsGene:Solyc08g036600.1	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643
GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR14494	SUPFAM:SSF50978	UniParc:UPI000276C076	UniProt:K4CK20	MapMan:23.5.1.1.1.8	:

Description

No Description!

Coordinates

chr8:+:10889562..10890170

Molecular Weight (calculated)

21911.1 Da

IEP (calculated)

6.618

GRAVY (calculated)

-0.053

Length

203 amino acids

Sequence
(BLAST)

001: MPSIPQPGEV TICEINRDLI TADELSDDAA KETYGKVLGI IFSPVPFQSE NLLSTLSSEQ GADQRKSGLL WAALQAVSTS LLRHCFHPID VKLLQDVDFH
101: VLDWHQHKHI LAFISGQHQV RIRDYEDSEG GSPCVLINDS QKDVRSLSWR PNGGRALAVA CKGGICIWAA SFLGNTASVR SGVTLGTLSR GSGTKWTLVV
201: FXX

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.