Factsheet for PGSC0003DMT400046078

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g036600.1.1	Tomato	nucleus	39.63	95.07
GSMUA_Achr8P26090_001	Banana	cytosol	58.93	64.93
VIT_08s0040g00290.t01	Wine grape	extracellular	30.39	64.63
Zm00001d023264_P004	Maize	cytosol	56.67	62.02
KXG22856	Sorghum	cytosol	56.06	61.49
Zm00001d023266_P001	Maize	cytosol, golgi, plastid	18.07	61.11
TraesCS5D01G152200.1	Wheat	cytosol	54.21	59.73
TraesCS5B01G138600.2	Wheat	cytosol	54.21	59.73
Os12t0129400-01	Rice	cytosol	54.0	59.37
AT3G56900.1	Thale cress	cytosol	54.41	59.28
TraesCS5A01G138500.1	Wheat	cytosol	52.98	58.9
Os11t0132700-01	Rice	cytosol, nucleus	53.39	58.69
KRG95023	Soybean	cytosol, nucleus	53.8	58.48
KRH66657	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	53.39	58.04
Bra007281.1-P	Field mustard	cytosol	50.31	55.43
CDX72100	Canola	cytosol	50.92	55.36
CDY27182	Canola	cytosol	50.1	55.2
HORVU5Hr1G045070.3	Barley	plastid	52.16	50.7
Os12t0131300-01	Rice	cytosol	8.01	39.39
KRH37825	Soybean	cytosol, endoplasmic reticulum, plastid, vacuole	11.5	32.18
Os12t0129650-01	Rice	cytosol	2.87	18.42

Protein Annotations

EntrezGene:102600134	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.8	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737
GO:GO:0005783	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1BIM3	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400017881	PGSC:PGSC0003DMG400017881	EnsemblPlants:PGSC0003DMT400046078	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR14494
SMART:SM00320	SUPFAM:SSF101908	SignalP:SignalP-noTM	UniParc:UPI000296B086	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	RefSeq:XP_006346832.1	SEG:seg	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400017881]

Coordinates

chr8:-:12697257..12699381

Molecular Weight (calculated)

53487.6 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.038

Length

487 amino acids

Sequence
(BLAST)

001: MVFVLKALMI FFSLPFLKAC LEKAKSWQES TQNRNHKPCL SLCCLKNMPS FPQPGEVTIC EINRDLITAD ELSDDAAKET YGKVLGIIFS PVPFQSENLL
101: SALSSEQGAD QRKSGLLWAA LQAVSTGSLR HFFHPIDVKL LQDVDFHVLD WHQHKHILAF ISGQHQVTIR DYEDSEGGSP CVLINDSQKD VRSLSWRPNG
201: GRALAVACKG GICIWAASFP GNTASVRSGV TLGTLSRGSG TKWTLVDVLL SPEHEQITAL SWSPNGKYLA SASFESSSFI IWDVAQGVGT PIRRGLGGIS
301: LLRWSPSGDY FFSAKFDGTF YLWETNTWTS EPWSSTNGFV MGAAWDPDGS RILIAFSESS TLGSIHFATR PPSLDAHLIP VELSDIQSLT GSRGIDKIAW
401: DASGERLALS YRDGNDLYRG LIAIYDVRRS PLISASLVGF IRGPGNDPKP IAFSFHDKFK QGPLLSVCWS SGFCCTYPLI FRSHVLP

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.