Factsheet for Os12t0129400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0132700-01	Rice	cytosol, nucleus	96.16	96.16
TraesCS5B01G138600.2	Wheat	cytosol	89.16	89.37
TraesCS5D01G152200.1	Wheat	cytosol	88.71	88.91
TraesCS5A01G138500.1	Wheat	cytosol	87.36	88.36
Zm00001d023264_P004	Maize	cytosol	85.1	84.72
KXG22856	Sorghum	cytosol	84.65	84.46
Os12t0131300-01	Rice	cytosol	18.51	82.83
HORVU5Hr1G045070.3	Barley	plastid	85.33	75.45
Os12t0129650-01	Rice	cytosol	11.51	67.11
GSMUA_Achr8P26090_001	Banana	cytosol	63.88	64.03
VIT_08s0040g00290.t01	Wine grape	extracellular	29.35	56.77
AT3G56900.1	Thale cress	cytosol	55.76	55.26
Bra007281.1-P	Field mustard	cytosol	54.4	54.52
CDY27182	Canola	cytosol	54.18	54.3
CDX72100	Canola	cytosol	54.63	54.02
PGSC0003DMT400046078	Potato	extracellular, plasma membrane	59.37	54.0
KRH66657	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	53.72	53.12
KRG95023	Soybean	cytosol, nucleus	53.5	52.9
Solyc08g036600.1.1	Tomato	nucleus	20.54	44.83
KRH37825	Soybean	cytosol, endoplasmic reticulum, plastid, vacuole	12.87	32.76

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.8	EntrezGene:4351405	EMBL:AK241371	InterPro:Apc4_WD40_dom	UniProt:B7F8R8
ProteinID:BAT15726.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006810	GO:GO:0006913
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlantsGene:Os12g0129400	EnsemblPlants:Os12t0129400-01	PFAM:PF00400	PFAM:PF12894	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR14494	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000188AF67	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015620616.1	SEG:seg	:	:

Description

OsWD40-192Similar to predicted protein. (Os12t0129400-01)

Coordinates

chr12:-:1405136..1409433

Molecular Weight (calculated)

47844.5 Da

IEP (calculated)

6.284

GRAVY (calculated)

-0.100

Length

443 amino acids

Sequence
(BLAST)

001: MPSFPPPGGV TVCEINRDLV VADALSDDRA KDAYGDVLGM VFSPIPFQPD ATVATHEPPA VTEAAEPAEV VPRTSLASTI AESFKQMLFP SCNPNLLQEI
101: DTQKVSWNPH KHCLAFVSGK NQVTVHDFEE PDNKESYILT SDHQKDVKAV EWRPNSGKVI AVGCKGGICL WSASYPGNVA SVKSGVTSSS FGAFPRGSGG
201: QWILVDILRG SSAELVSALC WKPDGRYLVS ASCNSPSFTI WDVSQGLGTP IRRGLSSISL VRWSPSGDYL LTAKLDGTFH LWETNTWTSE PWSSSNGYVS
301: GANWDPEGRT ALLSFSNSTT LGSIHFSSKP PSLDAHLLPV ELPEISSLIV SRGIDKLAWD SSGERLALSF KDGNEMYHGL VAVYDVRRSP LVSVSLVGFI
401: RGPGDGAKPL AFAFHSKFKQ GPLLSVCWSS GWCCTYPLIL RPH

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.