Factsheet for Os11t0132700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0129400-01	Rice	cytosol	96.16	96.16
TraesCS5B01G138600.2	Wheat	cytosol	87.13	87.33
TraesCS5D01G152200.1	Wheat	cytosol	86.68	86.88
TraesCS5A01G138500.1	Wheat	cytosol	85.33	86.3
Zm00001d023264_P004	Maize	cytosol	85.33	84.94
Os12t0131300-01	Rice	cytosol	18.96	84.85
KXG22856	Sorghum	cytosol	84.88	84.68
HORVU5Hr1G045070.3	Barley	plastid	83.75	74.05
Os12t0129650-01	Rice	cytosol	11.74	68.42
GSMUA_Achr8P26090_001	Banana	cytosol	63.88	64.03
VIT_08s0040g00290.t01	Wine grape	extracellular	29.35	56.77
AT3G56900.1	Thale cress	cytosol	54.85	54.36
Bra007281.1-P	Field mustard	cytosol	53.5	53.62
CDY27182	Canola	cytosol	53.27	53.39
PGSC0003DMT400046078	Potato	extracellular, plasma membrane	58.69	53.39
CDX72100	Canola	cytosol	53.72	53.12
KRH66657	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	53.05	52.46
KRG95023	Soybean	cytosol, nucleus	52.82	52.23
Solyc08g036600.1.1	Tomato	nucleus	20.77	45.32
KRH37825	Soybean	cytosol, endoplasmic reticulum, plastid, vacuole	11.74	29.89

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.8	EntrezGene:4349688	EMBL:AK103286	InterPro:Apc4_WD40_dom	ProteinID:BAF27510.1
ProteinID:BAT12537.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006810	GO:GO:0006913
GO:GO:0008150	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os11g0132700	EnsemblPlants:Os11t0132700-01
PFAM:PF00400	PFAM:PF12894	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR14494	UniProt:Q0IUV5
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000DD9AFD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_015617579.1	SEG:seg	:	:	:

Description

WD40 repeat-like domain containing protein. (Os11t0132700-01)

Coordinates

chr11:-:1491987..1496335

Molecular Weight (calculated)

47967.8 Da

IEP (calculated)

6.083

GRAVY (calculated)

-0.075

Length

443 amino acids

Sequence
(BLAST)

001: MPSFPPPGAV TICEINRDLV AADAVSDDRA KDAYGDVLGM VFSPIPFQPD AIVATHEPPA ATEAAEPAEI VPRTSLASTI AESFKQMIFP SCDPNLLQEI
101: DTQKVSWNPH KHCLAFVSGK NQVTVHDFEE PDNKESYILT SDHQKDVKAV EWRPNSGKMI AVGCKGGICL WSASYPGNVA SVKSGVTSSS FGAFPRGSGG
201: QWILVDILRG SSAELVSALC WKPDGRYLVS ASCNSPSFTI WDVSQGLGMP IRRGLSSISL VQWSPSGDYL LTAKLDGTFH LWETNTWTSE PWSSSNGYVS
301: GANWDPEGRI VLLSFSNSTT LGSIHFSSKP PSLDAHLLPV EHPEISSLIV SRGIDKLAWD SSGERLALSF KDGNEMYHGL VAVYDVRRSP LVSVLLVGFI
401: RGPGEGAKPL AFAFHSKFKQ GPLLSVCWSS GWCCTYPLIL RPH

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.