Factsheet for GSMUA_Achr8P26090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22856	Sorghum	cytosol	66.06	65.77
Zm00001d023264_P004	Maize	cytosol	65.84	65.39
TraesCS5D01G152200.1	Wheat	cytosol	65.16	65.16
TraesCS5B01G138600.2	Wheat	cytosol	64.71	64.71
VIT_08s0040g00290.t01	Wine grape	extracellular	33.48	64.63
TraesCS5A01G138500.1	Wheat	cytosol	63.57	64.16
Os12t0129400-01	Rice	cytosol	64.03	63.88
Os11t0132700-01	Rice	cytosol, nucleus	64.03	63.88
Zm00001d023266_P001	Maize	cytosol, golgi, plastid	19.68	60.42
AT3G56900.1	Thale cress	cytosol	60.63	59.96
PGSC0003DMT400046078	Potato	extracellular, plasma membrane	64.93	58.93
Bra007281.1-P	Field mustard	cytosol	57.69	57.69
CDY27182	Canola	cytosol	57.47	57.47
CDX72100	Canola	cytosol	57.69	56.92
KRG95023	Soybean	cytosol, nucleus	57.01	56.25
KRH66657	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	55.66	54.91
HORVU5Hr1G045070.3	Barley	plastid	62.22	54.89
Solyc08g036600.1.1	Tomato	nucleus	23.76	51.72
Os12t0131300-01	Rice	cytosol	10.18	45.45
KRH37825	Soybean	cytosol, endoplasmic reticulum, plastid, vacuole	13.57	34.48
Os12t0129650-01	Rice	cytosol	4.52	26.32

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.8	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737	GO:GO:0005783
EnsemblPlantsGene:GSMUA_Achr8G26090_001	EnsemblPlants:GSMUA_Achr8P26090_001	EnsemblPlants:GSMUA_Achr8T26090_001	InterPro:IPR001680	InterPro:IPR015943	UniProt:M0TTR2
PFscan:PS50082	PANTHER:PTHR14494	SMART:SM00320	SUPFAM:SSF82171	UniParc:UPI0002956893	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	SEG:seg	:	:	:	:

Description

WD domain, G-beta repeat domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G26090_001]

Coordinates

chr8:-:29758559..29771970

Molecular Weight (calculated)

48707.9 Da

IEP (calculated)

5.938

GRAVY (calculated)

-0.106

Length

442 amino acids

Sequence
(BLAST)

001: MPSFPQAGAV TICEINRDLI TAENLFDDRA KETYGKVLGM VFSPIAFQPD LMMPDTEQVA EQELSIPVPT RGFAGLKVSI SESIKRIFCP NELNALEEVD
101: TQRVSWHPHK HCLAFVSGPS QVTIRDYEDS DSKDPCILTS DFQRGIKTLE WRPNSGKMLS VACKGGICIW SASFPGNAPS VRSGVTSSVS SVSRGSGIRW
201: ILVDFLQSPN DEQINVLSWS QKLSDAQCNL ISAFTVWDVS QGLGTPIRRG LGTISMLKWS PSGDYFLTAK FDGTFYLWET NTWTSEPWSS TSGYVTGATW
301: DPEGRMILIS FSESVTLGSI HFASRPPSLD AHLVPVELRE IVSLTGSRGI EKVTWDASGE RLALSYKDGD DMYSGLIAIY DTKRTPLVSA SLVGFIRGPG
401: EKPKSLAFAF HNKFKQGPLL SVCWSSGWCC TYPLIFRSHI LP

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.