Factsheet for VIT_08s0040g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37825	Soybean	cytosol, endoplasmic reticulum, plastid, vacuole	37.99	50.0
Zm00001d023266_P001	Maize	cytosol, golgi, plastid	28.82	45.83
AT3G56900.1	Thale cress	cytosol	79.48	40.72
KRG95023	Soybean	cytosol, nucleus	79.04	40.4
KRH66657	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	77.73	39.73
Bra007281.1-P	Field mustard	cytosol	74.67	38.69
CDY27182	Canola	cytosol	74.24	38.46
CDX72100	Canola	cytosol	74.67	38.17
GSMUA_Achr8P26090_001	Banana	cytosol	64.63	33.48
TraesCS5D01G152200.1	Wheat	cytosol	60.26	31.22
TraesCS5B01G138600.2	Wheat	cytosol	59.83	31.0
KXG22856	Sorghum	cytosol	59.83	30.86
PGSC0003DMT400046078	Potato	extracellular, plasma membrane	64.63	30.39
TraesCS5A01G138500.1	Wheat	cytosol	58.08	30.37
Zm00001d023264_P004	Maize	cytosol	58.95	30.34
Os11t0132700-01	Rice	cytosol, nucleus	56.77	29.35
Os12t0129400-01	Rice	cytosol	56.77	29.35
HORVU5Hr1G045070.3	Barley	plastid	59.83	27.35
VIT_08s0040g00280.t01	Wine grape	nucleus	3.06	3.48
Os12t0131300-01	Rice	cytosol	1.31	3.03
Solyc08g036600.1.1	Tomato	nucleus	2.62	2.96
Os12t0129650-01	Rice	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100248313	wikigene:100248313	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.8	ProteinID:CBI32868	ProteinID:CBI32868.3
UniProt:D7TQ61	EMBL:FN596008	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005737
GO:GO:0005783	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	InterPro:IPR001680	InterPro:IPR015943
EntrezGene:LOC100248313	wikigene:LOC100248313	PFscan:PS50082	PANTHER:PTHR14494	SUPFAM:SSF82171	TIGR:TC69298
TMHMM:TMhelix	UniParc:UPI0001BE3A1A	ArrayExpress:VIT_08s0040g00290	EnsemblPlantsGene:VIT_08s0040g00290	EnsemblPlants:VIT_08s0040g00290.t01	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	RefSeq:XP_002283996	RefSeq:XP_002283996.1	:	:	:

Description

No Description!

Coordinates

chr8:+:11220311..11226895

Molecular Weight (calculated)

24945.9 Da

IEP (calculated)

7.500

GRAVY (calculated)

0.183

Length

229 amino acids

Sequence
(BLAST)

001: MSFLVIGAFS YAVCITVLSS FTIWDVAKGL GTPIRRGLGG ISILKWSPTG DYFLSAKFDG TFYLWETNTW TSEPWSSTSG FVTGATWDPD GHMVLIAFSK
101: SSTLGSVHFA SKPPSLDAHL LPVDLPEIMS LTGSQGIEKI AWDATGERLA LSYKGGDELY KGLIAIYDVR RNPLISASLI GFIRGPGENP KPLAFSFHDK
201: FKQGPLLSVC WSSGFCCTYP LIFRSHALS

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.