CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, vacuole, cytosol

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 2
plasma membrane 2
extracellular 1
vacuole 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g00290.t01	Wine grape	extracellular	50.0	37.99
Zm00001d023266_P001	Maize	cytosol, golgi, plastid	24.71	29.86
KRG95023	Soybean	cytosol, nucleus	58.05	22.54
KRH66657	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	56.32	21.88
AT3G56900.1	Thale cress	cytosol	50.0	19.46
Bra007281.1-P	Field mustard	cytosol	45.98	18.1
CDY27182	Canola	cytosol	45.98	18.1
CDX72100	Canola	cytosol	45.98	17.86
GSMUA_Achr8P26090_001	Banana	cytosol	34.48	13.57
TraesCS5B01G138600.2	Wheat	cytosol	33.33	13.12
TraesCS5D01G152200.1	Wheat	cytosol	33.33	13.12
KXG22856	Sorghum	cytosol	33.33	13.06
Os12t0129400-01	Rice	cytosol	32.76	12.87
TraesCS5A01G138500.1	Wheat	cytosol	31.61	12.56
Zm00001d023264_P004	Maize	cytosol	31.61	12.36
Os11t0132700-01	Rice	cytosol, nucleus	29.89	11.74
HORVU5Hr1G045070.3	Barley	plastid	33.33	11.58
PGSC0003DMT400046078	Potato	extracellular, plasma membrane	32.18	11.5
Os12t0131300-01	Rice	cytosol	2.87	5.05
Os12t0129650-01	Rice	cytosol	1.72	3.95
Solyc08g036600.1.1	Tomato	nucleus	4.02	3.45

Protein Annotations

EMBL:ACUP02005518	EnsemblPlants:KRH37825	EnsemblPlantsGene:GLYMA_09G092000	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150
PANTHER:PTHR14494	ProteinID:KRH37825	ProteinID:KRH37825.1	UniParc:UPI000294A0CB	UniProt:K7LCQ8	MapMan:23.5.1.1.1.8

Description

hypothetical protein

Coordinates

chr9:+:12467785..12469701

Molecular Weight (calculated)

19558.8 Da

IEP (calculated)

6.658

GRAVY (calculated)

0.240

Length

174 amino acids

Sequence
(BLAST)

001: MTFACVKPSL TNSTPPSADF SSLCLSTTLI VTLSLFIDAH LLLVDLPEIL SLTGSQGIEK ITWDNSGERL VVSFKGGDDM YKGLIVIYDT RRTPLISRSL
101: IGFIKGHGDN PKPISFSFHK KFKQGPLLFV SNGLCCTYPF LFRSHMLFHN KDFCEILLVV YDFEQVDFDA NVFY

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.