Factsheet for HORVU5Hr1G045070.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G152200.1	Wheat	cytosol	83.03	94.12
TraesCS5B01G138600.2	Wheat	cytosol	83.03	94.12
TraesCS5A01G138500.1	Wheat	cytosol	82.04	93.84
Os12t0129400-01	Rice	cytosol	75.45	85.33
Os11t0132700-01	Rice	cytosol, nucleus	74.05	83.75
KXG22856	Sorghum	cytosol	70.86	79.95
Zm00001d023264_P004	Maize	cytosol	70.66	79.55
GSMUA_Achr8P26090_001	Banana	cytosol	54.89	62.22
VIT_08s0040g00290.t01	Wine grape	extracellular	27.35	59.83
Os12t0129650-01	Rice	cytosol	8.58	56.58
Os12t0131300-01	Rice	cytosol	11.18	56.57
AT3G56900.1	Thale cress	cytosol	48.3	54.14
Bra007281.1-P	Field mustard	cytosol	46.51	52.71
CDY27182	Canola	cytosol	46.31	52.49
CDX72100	Canola	cytosol	46.71	52.23
PGSC0003DMT400046078	Potato	extracellular, plasma membrane	50.7	52.16
KRH66657	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	45.31	50.67
KRG95023	Soybean	cytosol, nucleus	45.11	50.45
Solyc08g036600.1.1	Tomato	nucleus	16.17	39.9
KRH37825	Soybean	cytosol, endoplasmic reticulum, plastid, vacuole	11.58	33.33

Protein Annotations

EnsemblPlants:HORVU5Hr1G045070.3	EnsemblPlantsGene:HORVU5Hr1G045070	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Apc4_WD40_dom	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR14494	PFAM:PF00400	PFAM:PF12894	PFscan:PS50082	SEG:seg	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000B46ADC1	UniProt:A0A287R0Y4	MapMan:23.5.1.1.1.8	:	:

Description

No Description!

Coordinates

chrchr5H:-:348787173..348795746

Molecular Weight (calculated)

54316.3 Da

IEP (calculated)

8.322

GRAVY (calculated)

-0.218

Length

501 amino acids

Sequence
(BLAST)

001: QQPPAASLLA TRRATPPPSA PCRPPSVCLS IEFWTPFRIG KPSAPKAPTL GKGTRRPRRC RASLRRAASP SARSTATSVV ADSLSEERAK EAYGDVLGMV
101: FSPIPFQPDD LLAKHEAPAP DEAEPTECIP RTSLVSTIAE SFKQMLFPSC NPKLLEEFDT KKVSWNPHKH CLAFVSGKDQ VTVHDFEDSD GKESCSLTSE
201: HQKEVKAIEW RPNSGKMIAV GCKGGICLWS ASYPGNVASV KSGVTSSSFG AFPRGSTGQW ILVDVLRGSS TELVSALCWK PDGRYLASAS CNGQSFTIWD
301: VSEGLGTPIR RGLSSISLVR WSPSGDYFLT AKFDGTFHLW ETNTWTSEPW SSSNGYVTGA NWDPEGRVAL LSFSNSTTLG SVHFSSKPPS LDAHLLPVEL
401: PEISSLIVSR GIEKLAWDAS GERLALSFKD GNETYQGLVA VYDVRRSPLV SVSLVGFIRG PGEGVKALAF AFHNKFKQGP LLSVCWSSGW CCTYPLILRS
501: H

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.