Factsheet for TraesCS5A01G138500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G138600.2	Wheat	cytosol	98.17	97.29
TraesCS5D01G152200.1	Wheat	cytosol	97.95	97.06
Os12t0129400-01	Rice	cytosol	88.36	87.36
Os11t0132700-01	Rice	cytosol, nucleus	86.3	85.33
HORVU5Hr1G045070.3	Barley	plastid	93.84	82.04
Zm00001d023264_P004	Maize	cytosol	82.65	81.35
KXG22856	Sorghum	cytosol	82.42	81.31
Os12t0131300-01	Rice	cytosol	15.98	70.71
GSMUA_Achr8P26090_001	Banana	cytosol	64.16	63.57
VIT_08s0040g00290.t01	Wine grape	extracellular	30.37	58.08
Os12t0129650-01	Rice	cytosol	10.05	57.89
AT3G56900.1	Thale cress	cytosol	57.08	55.93
Bra007281.1-P	Field mustard	cytosol	55.25	54.75
CDY27182	Canola	cytosol	55.02	54.52
CDX72100	Canola	cytosol	55.48	54.24
PGSC0003DMT400046078	Potato	extracellular, plasma membrane	58.9	52.98
KRH66657	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	53.65	52.46
KRG95023	Soybean	cytosol, nucleus	53.42	52.23
Solyc08g036600.1.1	Tomato	nucleus	20.55	44.34
KRH37825	Soybean	cytosol, endoplasmic reticulum, plastid, vacuole	12.56	31.61

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.8	InterPro:Apc4_WD40_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR14494	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5A01G138500	EnsemblPlants:TraesCS5A01G138500.1
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr5A:-:310978623..310982825

Molecular Weight (calculated)

47529.0 Da

IEP (calculated)

5.424

GRAVY (calculated)

-0.133

Length

438 amino acids

Sequence
(BLAST)

001: MPSFPPPGGV TVCEINRDLV VADSLSEDRA KEAYGDVLGM VFSPIPFQPD DLLAKHEAPA PDEAELPESV PRTSLVSTIA ESFKQMLFPS CNPKLLEEFD
101: TQKVSWNPHK HCLAFVSGKD QVTVHDFEDS DGKESCILTS EHQKEVKAIE WRPNSGKMIA VGCNGGICLW SASYPGNVAS MKSGVTSSSF GAFPRGSSGQ
201: WILVDVLRGS SPELVSALCW KPDGRYLASA SCNGQSFTIW DVSQGLGTPI RRGLSSISLV RWSPSGDYFL TAKFDGTFHL WETNTWTSEP WSSSNGYVTG
301: ANWDPEGRVA LLSFSNSTTL GSVHFSSKPP SLDAHLLPVE LPEISSLIVS RGIEKLAWDA AGERLAVSFK DGNETYQGLV AVYDVRRSPL VSVSLVGPGE
401: GVKALAFAFH NKFKQGPLLS VCWSSGWCCT YPLILRSH

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.