CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95023	Soybean	cytosol, nucleus	95.76	95.76
VIT_08s0040g00290.t01	Wine grape	extracellular	39.73	77.73
AT3G56900.1	Thale cress	cytosol	67.86	68.01
Bra007281.1-P	Field mustard	cytosol	64.29	65.16
CDY27182	Canola	cytosol	64.06	64.93
CDX72100	Canola	cytosol	64.73	64.73
KRH37825	Soybean	cytosol, endoplasmic reticulum, plastid, vacuole	21.88	56.32
GSMUA_Achr8P26090_001	Banana	cytosol	54.91	55.66
TraesCS5D01G152200.1	Wheat	cytosol	53.79	54.52
TraesCS5B01G138600.2	Wheat	cytosol	53.79	54.52
Os12t0129400-01	Rice	cytosol	53.12	53.72
TraesCS5A01G138500.1	Wheat	cytosol	52.46	53.65
PGSC0003DMT400046078	Potato	extracellular, plasma membrane	58.04	53.39
Os11t0132700-01	Rice	cytosol, nucleus	52.46	53.05
KXG22856	Sorghum	cytosol	52.23	52.7
Zm00001d023264_P004	Maize	cytosol	52.23	52.58
Solyc08g036600.1.1	Tomato	nucleus	23.44	51.72
HORVU5Hr1G045070.3	Barley	plastid	50.67	45.31
Zm00001d023266_P001	Maize	cytosol, golgi, plastid	13.84	43.06
Os12t0131300-01	Rice	cytosol	8.26	37.37
Os12t0129650-01	Rice	cytosol	3.79	22.37

Protein Annotations

EntrezGene:100781306	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.8	EMBL:ACUP02002001	EnsemblPlantsGene:GLYMA_03G120400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	UniProt:I1JMY9
InterPro:IPR001680	InterPro:IPR015943	EnsemblPlants:KRH66657	ProteinID:KRH66657	ProteinID:KRH66657.1	PFAM:PF00400
PANTHER:PTHR14494	SMART:SM00320	SUPFAM:SSF82171	UniParc:UPI000295641B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:33190818..33197573

Molecular Weight (calculated)

48975.9 Da

IEP (calculated)

6.243

GRAVY (calculated)

-0.135

Length

448 amino acids

Sequence
(BLAST)

001: MASFPPLGSL TLCEVNRDLI TVDALSDDRA NQTYGKILGL VFSPVPFHNL ENDASDQDGA TTTATTAGES VRRKSPVALL QGFMNSYLGR LFYPDDVHLL
101: PEVDLQGVSW HPNKHIIAFI SAPTQVLVRD YQESEGKDPS ILTNESQRDA RVLEWRPNGG KMLAVGCKGG ICMWAASYPG NAASVRSGAA SFLGGLSRSS
201: GNRYILVDFL RSPYDEHVSA LTWSPDGRYL ASASYESSSF SVWDFAQGVG TPIRRGLGGI SMLKWSPTGD YFFASKFDGT FYLWETNTWT SEQWSSTSGF
301: VKGATWDPDG RMILLAFSES STLGSIHFAS KPPSLDAHLL PVDLPEILSL TGSQGIEKIA WDNSGERLAV SFKGGEDIYR GLIAVYDTRR TPLISTSLIG
401: FIRGPGDNPK PISFLFHGKF KQGPLLSVCW SSGFCCTYPL LFRSHMLP

Best Arabidopsis Sequence Match ( AT3G56900.1 )
(BLAST)

001: MASFPHPGSV TVCEINRDLI TAQNLSDERA QETYGKVLGM VFSPVSFDST PSSLQENEGQ ENGDKASGES KGLVATLQMK VADSLKQILQ PTDVTLLSEI
101: DLQGVSWHQG KHIIAFISGA NQVTIRDYED KDEKEPCILT SDSQRNVKAL EWRPNGGKSL SIACRGGICI WAASYPGNMA LVRSGGSALR GSLSRGSGTR
201: WILVDFLRCQ NDEQISALSW SPCGRYLASA SYDSSSFTIW DVSQGAGTPI RRGLGGISML KWSPTGDYFF AARFDGTFCL WETNTWTSEP WSLSSGSGSV
301: TGAIWDPEGR FILISFSKSS TLGSVHFSSK PPSLDAHLLP VELPEIASLT GCEGIEKIAW DASGERLAVS YKGGDENYKG LIAIYDTRRT PIVSASLVGF
401: IRGPGENPKA LSFSFHDKFK QGPLLSVCWS TGFCCTYPLI FRSHVLP

Arabidopsis Description

AAASAladin [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.