CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
peroxisome 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60966	Soybean	cytosol, nucleus, peroxisome	95.13	93.31
CDX87634	Canola	cytosol	70.45	72.58
Bra015782.1-P	Field mustard	cytosol	69.81	71.91
VIT_18s0001g00490.t01	Wine grape	cytosol, peroxisome, plastid	70.45	70.92
CDX73237	Canola	cytosol	68.83	70.9
AT1G76150.1	Thale cress	cytosol, nucleus, peroxisome	70.78	70.55
HORVU2Hr1G059480.1	Barley	cytosol	19.81	67.03
Solyc12g094450.1.1	Tomato	cytosol	66.88	66.45
Zm00001d021463_P001	Maize	cytosol	13.96	62.32
HORVU4Hr1G052280.1	Barley	cytosol, peroxisome	20.13	62.0
PGSC0003DMT400075400	Potato	cytosol	67.53	61.36
HORVU5Hr1G027630.1	Barley	cytosol, mitochondrion, vacuole	14.29	61.11
Os09t0544900-01	Rice	cytosol	62.01	60.63
HORVU4Hr1G052310.1	Barley	cytosol, peroxisome	19.81	60.4
TraesCS5D01G346200.2	Wheat	peroxisome	63.64	59.76
GSMUA_Achr11P...	Banana	cytosol, golgi, peroxisome	62.01	59.5
TraesCS5B01G339100.1	Wheat	peroxisome	63.31	59.45
TraesCS5A01G341000.1	Wheat	peroxisome	62.66	59.38
HORVU7Hr1G046060.1	Barley	mitochondrion	13.96	58.11
KXG36107	Sorghum	peroxisome	59.74	57.68
Zm00001d006270_P001	Maize	extracellular, mitochondrion	60.39	57.06
HORVU6Hr1G064680.2	Barley	mitochondrion	18.83	55.77
EER99285	Sorghum	cytosol	60.71	53.74
Zm00001d021462_P001	Maize	cytosol, peroxisome, plastid	34.09	51.98
Zm00001d020860_P001	Maize	cytosol, peroxisome, plastid	19.48	50.42
HORVU5Hr1G085520.1	Barley	mitochondrion	63.64	49.49
Zm00001d053054_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	15.91	46.67
Zm00001d023647_P001	Maize	cytosol, mitochondrion	15.58	40.34
Zm00001d036800_P001	Maize	peroxisome	26.3	31.89

Protein Annotations

EMBL:ACUP02003383	EnsemblPlants:KRH51640	EnsemblPlantsGene:GLYMA_06G019900	Gene3D:3.10.129.10	InterPro:HotDog_dom_sf	InterPro:MaoC_dom
InterPro:Mfe-2	PANTHER:PTHR13078	PFAM:PF01575	ProteinID:KRH51640	ProteinID:KRH51640.1	SEG:seg
SUPFAM:SSF54637	UniParc:UPI000233A607	UniProt:I1K7F5	MapMan:5.7.3.3.1	:	:

Description

hypothetical protein

Coordinates

chr6:+:1504441..1508812

Molecular Weight (calculated)

34078.0 Da

IEP (calculated)

8.708

GRAVY (calculated)

-0.166

Length

308 amino acids

Sequence
(BLAST)

001: MGSASEFDPA LALSHKFPDT TYSYTERDAA LYALSVGVCL SDAVDADELK YVYHENGQES IKVLPTFSTL LVLRSGASGY NLPGLKYDPR LLLHGQQYIE
101: LYKPLPSSCH IHNKVSLAGL HDKGKAAILE IETKSYEKES GDLLCMNRTT VFLRGSGGFS KSSKPFSYTN YPVNQNPAVK IPESKPFSVF EDRTQPSQAL
201: LYRLSGDYNP LHSDPMVAKV AGFSRPILHG LCTLGFAVRA IIKCICRGDP DLVKSIAGRF LLHVYPGETL VTEMWLEGSR VIFRTKVKER KRTVLSGYVD
301: LRGLTSSL

Best Arabidopsis Sequence Match ( AT1G76150.1 )
(BLAST)

001: MATSDSEFNS DLLLAHKLPE TRYTYNERDV AIYALGIGAC GQDAVDSDEL KFVYHRNGQD LIQVLPTFAS LFTLGSLTEG LDLPGFKYDP SLLLHGQQYI
101: EIYRPLPSKA SLINKVSLAG LQDKGKAAIL ELETRSYEEG SGELLCMNRT TVFLRGAGGF SNSSQPFSYK NYPSNQGLAV KIPQRQPLTV CEERTQPSQA
201: LLYRLSGDYN PLHSDPEFAK LAGFPRPILH GLCTLGFAIK AIIKCVCKGD PTAVKTISGR FLTTVFPGET LITEMWLEGL RVIYQTKVKE RNKTVLAGYV
301: DIRGLSSSL

Arabidopsis Description

ECH2Enoyl-CoA hydratase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8VYI3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.