Factsheet for VIT_18s0001g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 3
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51640	Soybean	nucleus	70.92	70.45
KRH60966	Soybean	cytosol, nucleus, peroxisome	71.24	69.43
Solyc12g094450.1.1	Tomato	cytosol	68.95	68.06
CDX87634	Canola	cytosol	63.73	65.22
HORVU2Hr1G059480.1	Barley	cytosol	19.28	64.84
AT1G76150.1	Thale cress	cytosol, nucleus, peroxisome	65.36	64.72
Bra015782.1-P	Field mustard	cytosol	63.07	64.55
CDX73237	Canola	cytosol	62.75	64.21
HORVU4Hr1G052280.1	Barley	cytosol, peroxisome	20.59	63.0
PGSC0003DMT400075400	Potato	cytosol	69.61	62.83
HORVU4Hr1G052310.1	Barley	cytosol, peroxisome	20.26	61.39
Os09t0544900-01	Rice	cytosol	62.09	60.32
Zm00001d021463_P001	Maize	cytosol	13.07	57.97
GSMUA_Achr11P...	Banana	cytosol, golgi, peroxisome	60.46	57.63
TraesCS5D01G346200.2	Wheat	peroxisome	61.76	57.62
TraesCS5A01G341000.1	Wheat	peroxisome	61.11	57.54
Zm00001d006270_P001	Maize	extracellular, mitochondrion	60.46	56.75
KXG36107	Sorghum	peroxisome	58.82	56.43
TraesCS5B01G339100.1	Wheat	peroxisome	60.46	56.4
HORVU6Hr1G064680.2	Barley	mitochondrion	18.95	55.77
HORVU5Hr1G027630.1	Barley	cytosol, mitochondrion, vacuole	13.07	55.56
HORVU7Hr1G046060.1	Barley	mitochondrion	13.4	55.41
EER99285	Sorghum	cytosol	60.78	53.45
Zm00001d021462_P001	Maize	cytosol, peroxisome, plastid	33.99	51.49
Zm00001d020860_P001	Maize	cytosol, peroxisome, plastid	18.95	48.74
HORVU5Hr1G085520.1	Barley	mitochondrion	60.78	46.97
Zm00001d053054_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	15.36	44.76
Zm00001d023647_P001	Maize	cytosol, mitochondrion	16.01	41.18
Zm00001d036800_P001	Maize	peroxisome	25.16	30.32

Protein Annotations

EntrezGene:100262653	wikigene:100262653	Gene3D:3.10.129.10	MapMan:5.7.3.3.1	ProteinID:CBI18892	ProteinID:CBI18892.3
UniProt:E0CQT8	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0033542	GO:GO:0080023	InterPro:HotDog_dom_sf	EntrezGene:LOC100262653
wikigene:LOC100262653	InterPro:MaoC_dom	InterPro:Mfe-2	PFAM:PF01575	PFAM:PF13452	PANTHER:PTHR13078
SUPFAM:SSF54637	TIGR:TC57848	UniParc:UPI0001985689	ArrayExpress:VIT_18s0001g00490	EnsemblPlantsGene:VIT_18s0001g00490	EnsemblPlants:VIT_18s0001g00490.t01
unigene:Vvi.1023	RefSeq:XP_002285911	RefSeq:XP_002285911.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:1365478..1370686

Molecular Weight (calculated)

34135.9 Da

IEP (calculated)

7.175

GRAVY (calculated)

-0.145

Length

306 amino acids

Sequence
(BLAST)

001: MGQTSDFDPN LLISHKFPEV TYSYSERDVI LYALGVGACA RDAVDENELK YVCHEDGQQL IQVLPTFAAL FAVASFDFQL PGLEYDPRLL LHGQQYIEIH
101: KSFPSSGCVQ NKASISGLHD KGKAAIVEIE IESYEKESGE LLCKNRMTTY LRGAGSFSRS SEPYSYSKYP NQPVSAVKVP KSQPFVVFED CTQPSQALLY
201: RLSGDYNPLH SDPGFAKIAG FSRPILHGLC TLGFAVRAII RCICRGDPNM VKNVQARFLL HVYPGETLIT EMWLQGLRVV YQTKVKERSR TVLSGYVDLS
301: RLASSL

Best Arabidopsis Sequence Match ( AT1G76150.1 )
(BLAST)

001: MATSDSEFNS DLLLAHKLPE TRYTYNERDV AIYALGIGAC GQDAVDSDEL KFVYHRNGQD LIQVLPTFAS LFTLGSLTEG LDLPGFKYDP SLLLHGQQYI
101: EIYRPLPSKA SLINKVSLAG LQDKGKAAIL ELETRSYEEG SGELLCMNRT TVFLRGAGGF SNSSQPFSYK NYPSNQGLAV KIPQRQPLTV CEERTQPSQA
201: LLYRLSGDYN PLHSDPEFAK LAGFPRPILH GLCTLGFAIK AIIKCVCKGD PTAVKTISGR FLTTVFPGET LITEMWLEGL RVIYQTKVKE RNKTVLAGYV
301: DIRGLSSSL

Arabidopsis Description

ECH2Enoyl-CoA hydratase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8VYI3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.