CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015782.1-P	Field mustard	cytosol	97.32	97.32
CDX87634	Canola	cytosol	94.31	94.31
AT1G76150.1	Thale cress	cytosol, nucleus, peroxisome	90.97	88.03
KRH51640	Soybean	nucleus	70.9	68.83
KRH60966	Soybean	cytosol, nucleus, peroxisome	69.9	66.56
HORVU2Hr1G059480.1	Barley	cytosol	19.4	63.74
Solyc12g094450.1.1	Tomato	cytosol	65.55	63.23
VIT_18s0001g00490.t01	Wine grape	cytosol, peroxisome, plastid	64.21	62.75
HORVU4Hr1G052280.1	Barley	cytosol, peroxisome	20.74	62.0
HORVU4Hr1G052310.1	Barley	cytosol, peroxisome	20.4	60.4
HORVU5Hr1G027630.1	Barley	cytosol, mitochondrion, vacuole	14.38	59.72
Zm00001d021463_P001	Maize	cytosol	13.71	59.42
Os09t0544900-01	Rice	cytosol	62.54	59.37
Zm00001d006270_P001	Maize	extracellular, mitochondrion	64.21	58.9
TraesCS5A01G341000.1	Wheat	peroxisome	63.21	58.15
PGSC0003DMT400075400	Potato	cytosol	65.89	58.11
TraesCS5D01G346200.2	Wheat	peroxisome	63.21	57.62
TraesCS5B01G339100.1	Wheat	peroxisome	63.21	57.62
EER99285	Sorghum	cytosol	64.55	55.46
KXG36107	Sorghum	peroxisome	58.86	55.17
HORVU6Hr1G064680.2	Barley	mitochondrion	18.73	53.85
HORVU7Hr1G046060.1	Barley	mitochondrion	13.04	52.7
GSMUA_Achr11P...	Banana	cytosol, golgi, peroxisome	56.19	52.34
Zm00001d021462_P001	Maize	cytosol, peroxisome, plastid	32.44	48.02
HORVU5Hr1G085520.1	Barley	mitochondrion	63.55	47.98
Zm00001d020860_P001	Maize	cytosol, peroxisome, plastid	17.39	43.7
Zm00001d053054_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	14.72	41.9
Zm00001d023647_P001	Maize	cytosol, mitochondrion	15.38	38.66
Zm00001d036800_P001	Maize	peroxisome	26.42	31.1

Protein Annotations

EnsemblPlants:CDX73237	EnsemblPlantsGene:GSBRNA2T00103739001	Gene3D:3.10.129.10	InterPro:HotDog_dom_sf	InterPro:MaoC_dom	InterPro:Mfe-2
PANTHER:PTHR13078	PFAM:PF01575	ProteinID:CDX73237	ProteinID:CDX73237.1	SUPFAM:SSF54637	UniParc:UPI0004EE947B
MapMan:5.7.3.3.1	:	:	:	:	:

Description

BnaC06g36850D

Coordinates

chrLK031797:-:2817866..2820424

Molecular Weight (calculated)

32564.2 Da

IEP (calculated)

8.189

GRAVY (calculated)

-0.070

Length

299 amino acids

Sequence
(BLAST)

001: MASSDSEFNP DLLLAHKLPE TRSTYNERDV AIYALGVGAC GQDAVDSVEL KFVYHENGQE HVQVLPTFVS LFSLGSLTDG LDLPGFKYDP SLLLHGQQYI
101: EVYRPLPSKA SLINKVSLAG LQDKGKAAIL EIETRSYEQG SGELLCMNRT TVFLRGAGGF SNSSQPFSYK NYPSNQGLAV KIPQTQPSAA LLYRLSGDYN
201: PLHSDPNVAK LAGFPRPILH GLCTLGFAIK AVIKCICKGD PSAVKTISGR FLATVFPGET LITEMWLQGL RVIYQTKVKE RNKAVLSGYV DIRGLSSSL

Best Arabidopsis Sequence Match ( AT1G76150.1 )
(BLAST)

001: MATSDSEFNS DLLLAHKLPE TRYTYNERDV AIYALGIGAC GQDAVDSDEL KFVYHRNGQD LIQVLPTFAS LFTLGSLTEG LDLPGFKYDP SLLLHGQQYI
101: EIYRPLPSKA SLINKVSLAG LQDKGKAAIL ELETRSYEEG SGELLCMNRT TVFLRGAGGF SNSSQPFSYK NYPSNQGLAV KIPQRQPLTV CEERTQPSQA
201: LLYRLSGDYN PLHSDPEFAK LAGFPRPILH GLCTLGFAIK AIIKCVCKGD PTAVKTISGR FLTTVFPGET LITEMWLEGL RVIYQTKVKE RNKTVLAGYV
301: DIRGLSSSL

Arabidopsis Description

ECH2Enoyl-CoA hydratase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8VYI3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.