CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90241
KRG99420
KRH04275
KRH16959
KRH23958
KRH28216
KRH33469
KRH39841
KRH45608
KRH53667
KRH57556
KRH64261
KRH69629
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35500.1	KRG90241	AT2G33150.1	21798944
AT2G35500.1	KRH33469	AT2G33150.1	21798944
AT2G35500.1	KRG99420	AT2G42490.1	21798944
AT2G35500.1	KRH45608	AT2G42490.1	21798944
AT2G35500.1	KRH69629	AT2G42490.1	21798944
AT2G35500.1	KRH16959	AT3G49580.1	21798944
AT2G35500.1	KRH53667	AT3G49580.1	21798944
AT2G35500.1	KRH64261	AT3G49580.1	21798944
AT2G35500.1	KRH04275	AT4G17680.1	21798944
AT2G35500.1	KRH28216	AT4G17680.1	21798944
AT2G35500.1	KRH57556	AT4G17680.1	21798944
AT2G35500.1	KRH77271	AT4G17680.1	21798944
AT2G35500.1	KRH23958	AT4G25200.1	21798944
AT2G35500.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49412	Soybean	cytosol	42.28	66.67
VIT_02s0012g01800.t01	Wine grape	plastid	62.06	61.73
HORVU1Hr1G050970.1	Barley	cytosol	41.19	59.14
Bra017318.1-P	Field mustard	plastid	59.62	56.7
CDY32125	Canola	plastid	59.35	56.44
AT2G35500.1	Thale cress	plastid	59.08	56.33
PGSC0003DMT400038338	Potato	plastid	57.72	55.91
Solyc08g076410.2.1	Tomato	plastid	57.72	55.18
GSMUA_Achr2P12160_001	Banana	plastid	55.01	52.32
TraesCS1D01G199100.1	Wheat	plastid	50.68	49.47
TraesCS1A01G195500.2	Wheat	plastid	50.41	49.08
Os10t0577700-01	Rice	plastid	49.32	48.53
EER94425	Sorghum	plastid	49.32	47.03
Zm00001d030109_P002	Maize	plastid	50.14	46.25
CDY61809	Canola	cytosol	26.83	41.95
CDX94450	Canola	cytosol	26.02	41.03

Protein Annotations

KEGG:00400+2.7.1.71	EntrezGene:100816906	Gene3D:2.60.40.790	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0L553
EMBL:ACUP02000021	InterPro:CS_dom	EnsemblPlantsGene:GLYMA_01G014900	GO:GO:0000287	GO:GO:0003674	GO:GO:0005488
InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR008978	EnsemblPlants:KRH74369	ProteinID:KRH74369	ProteinID:KRH74369.1
PFAM:PF01202	PFscan:PS51203	PANTHER:PTHR21087	PANTHER:PTHR21087:SF11	MetaCyc:PWY-6163	SUPFAM:SSF49764
InterPro:Shikimate/glucono_kinase	UniParc:UPI0002336DD7	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:1479986..1484286

Molecular Weight (calculated)

40477.9 Da

IEP (calculated)

6.064

GRAVY (calculated)

-0.286

Length

369 amino acids

Sequence
(BLAST)

001: MATVPARLCY LSTNPTTRNL NFSVLKPNVL SLRSFSLPQK HYLRLRPCKC SSTAPVSTTT YEFSDGSSEV ELRLNIGGLD VRSSRDILVD TNDTSLAIRV
101: LRPGSPITLI ETNPLFDRVK SSETIWYIDD DQLVVNFKKQ DPDLKWPDIM ESWESLTAGS PQLLQGTSIY LVGDSTEINQ KVAQELATGL GYTPLSTKEL
201: LELYTKQTVD SWLLAEGSDS VAEAESAVLE SISSHARAVV ATLGGQHSAA GRAGKWQHLY AGFTVWLSKT EALDEDSARL ETHKNVKDGI ISYTNADVVV
301: KLQGWDPAYA KSVAQACLSA LKQLIQSDKK LPGKKSLYIR LGCRGDWPNI KPPGWDPSSE GNTTLGTQL

Best Arabidopsis Sequence Match ( AT2G35500.1 )
(BLAST)

001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT

Arabidopsis Description

SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.