CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX79511
CDX84701
CDX89437
CDX90458
CDX98843
CDY03368
CDY04950
CDY08148
CDY09609
CDY14839
CDY17140
CDY19452
CDY22564
CDY23766
CDY35376
CDY37750
CDY47975
CDY52149
CDY65427

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35500.1	CDX79511	AT2G33150.1	21798944
AT2G35500.1	CDX84701	AT2G33150.1	21798944
AT2G35500.1	CDY17140	AT2G33150.1	21798944
AT2G35500.1	CDY19452	AT2G33150.1	21798944
AT2G35500.1	CDY23766	AT2G33150.1	21798944
AT2G35500.1	CDY37750	AT2G33150.1	21798944
AT2G35500.1	CDY14839	AT2G42490.1	21798944
AT2G35500.1	CDY22564	AT2G42490.1	21798944
AT2G35500.1	CDY35376	AT2G42490.1	21798944
AT2G35500.1	CDY47975	AT2G42490.1	21798944
AT2G35500.1	CDY08148	AT3G49580.1	21798944
AT2G35500.1	CDX90458	AT4G17680.1	21798944
AT2G35500.1	CDY09609	AT4G17680.1	21798944
AT2G35500.1	CDX89437	AT4G25200.1	21798944
AT2G35500.1	CDY03368	AT4G25200.1	21798944
AT2G35500.1	CDY65427	AT4G25920.1	21798944
AT2G35500.1	CDX70151	AT5G05410.1	18552202
AT2G35500.1	CDX98843	AT5G05410.1	18552202
AT2G35500.1	CDY04950	AT5G05410.1	18552202
AT2G35500.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017318.1-P	Field mustard	plastid	99.74	99.74
AT2G35500.1	Thale cress	plastid	83.76	83.98
VIT_02s0012g01800.t01	Wine grape	plastid	60.82	63.61
KRH74369	Soybean	plastid	56.44	59.35
HORVU1Hr1G050970.1	Barley	cytosol	38.92	58.75
PGSC0003DMT400038338	Potato	plastid	55.67	56.69
CDY61809	Canola	cytosol	34.02	55.93
Solyc08g076410.2.1	Tomato	plastid	54.9	55.18
CDX94450	Canola	cytosol	33.25	55.13
GSMUA_Achr2P12160_001	Banana	plastid	53.61	53.61
TraesCS1D01G199100.1	Wheat	plastid	46.65	47.88
Os10t0577700-01	Rice	plastid	46.13	47.73
TraesCS1A01G195500.2	Wheat	plastid	46.13	47.23
EER94425	Sorghum	plastid	46.13	46.25
Zm00001d030109_P002	Maize	plastid	47.68	46.25
KRH49412	Soybean	cytosol	27.32	45.3

Protein Annotations

EnsemblPlants:CDY32125	EnsemblPlantsGene:GSBRNA2T00051490001	Gene3D:2.60.40.790	Gene3D:3.40.50.300	InterPro:CS_dom	InterPro:HSP20-like_chaperone
InterPro:IPR007052	InterPro:IPR008978	InterPro:Shikimate/glucono_kinase	KEGG:00400+2.7.1.71	MetaCyc:PWY-6163	PANTHER:PTHR21087
PANTHER:PTHR21087:SF11	PFAM:PF01202	PFscan:PS51203	ProteinID:CDY32125	ProteinID:CDY32125.1	SEG:seg
SUPFAM:SSF49764	UniParc:UPI0004EDB460	UniPathway:UPA00053	UniProt:A0A078H0C2	MapMan:35.1	:

Description

BnaC04g44410DBnaC04g44410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0C2]

Coordinates

chrLK032287:-:449916..451782

Molecular Weight (calculated)

42680.3 Da

IEP (calculated)

5.960

GRAVY (calculated)

-0.372

Length

388 amino acids

Sequence
(BLAST)

001: MAALSSSATI FYSPSLTPFT AGQRSLSSPT RIRSSPRILR GFHSLRNREF HRFSQNVTAG GRFNSFSCNC LSAVSTTTLD YEFTDGGKEV ELRLRLKTGE
101: TLSPKDISVD ADGTSLSVKE KRNGLLVTLL ETNQLFEKIM PSETIWYIDE DQLVVNMKKV DGELKWPDVV ESWESLTAGM MQLLKGASIY VVGDSTEINQ
201: KVCRELAVGL GYSPLDSMEL LESFSKQTID SWILAEGEDS VAEAESSVLE SLSSHVRTVV STLGGKHGAA GRADKWRHLY SGFTVWVSQT EATDEESAKE
301: EARRNKQERE IGYSNADVVV KLQGWDPTHA KSVAQASLSA LKQLIISDKG LPGKKSLYIR LGCRGDWPNI KPPGWDPSSD TGAHPSFS

Best Arabidopsis Sequence Match ( AT2G35500.1 )
(BLAST)

001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT

Arabidopsis Description

SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.