Factsheet for Zm00001d030109_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003309_P002
Zm00001d010048_P004
Zm00001d017649_P001
Zm00001d029988_P001
Zm00001d044874_P001
Zm00001d047069_P001
Zm00001d051484_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35500.1	Zm00001d003309_P002	AT2G42490.1	21798944
AT2G35500.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT2G35500.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT2G35500.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT2G35500.1	Zm00001d051484_P001	AT4G17680.1	21798944
AT2G35500.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT2G35500.1	Zm00001d052194_P001	AT4G25200.1	21798944
AT2G35500.1	Zm00001d010048_P004	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G050970.1	Barley	cytosol	59.5	92.61
EER94425	Sorghum	plastid	86.25	89.15
Os10t0577700-01	Rice	plastid	77.0	82.13
TraesCS1A01G195500.2	Wheat	plastid	77.0	81.27
TraesCS1D01G199100.1	Wheat	plastid	76.75	81.22
GSMUA_Achr2P12160_001	Banana	plastid	49.5	51.03
KRH74369	Soybean	plastid	46.25	50.14
VIT_02s0012g01800.t01	Wine grape	plastid	45.75	49.33
AT2G35500.1	Thale cress	plastid	46.25	47.8
Bra017318.1-P	Field mustard	plastid	46.25	47.68
CDY32125	Canola	plastid	46.25	47.68
PGSC0003DMT400038338	Potato	plastid	42.75	44.88
Solyc08g076410.2.1	Tomato	plastid	43.25	44.82
KRH49412	Soybean	cytosol	25.0	42.73
CDY61809	Canola	cytosol	20.75	35.17
CDX94450	Canola	cytosol	19.5	33.33

Protein Annotations

KEGG:00400+2.7.1.71	Gene3D:2.60.40.790	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6K9Y9	InterPro:CS_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR008978	ProteinID:ONM00295.1
PFAM:PF01202	PFscan:PS51203	PANTHER:PTHR21087	PANTHER:PTHR21087:SF11	SUPFAM:SSF49764	InterPro:Shikimate/glucono_kinase
UniParc:UPI000844DE1A	EnsemblPlantsGene:Zm00001d030109	EnsemblPlants:Zm00001d030109_P002	EnsemblPlants:Zm00001d030109_T002	SEG:seg	:

Description

Probable inactive shikimate kinase like 2 chloroplastic

Coordinates

chr1:+:106376208..106378884

Molecular Weight (calculated)

43165.8 Da

IEP (calculated)

5.179

GRAVY (calculated)

-0.231

Length

400 amino acids

Sequence
(BLAST)

001: MRIGAGANMA ACSSVPCSFP AKPDPHRRSP SGILSSHLPR LPATQFRRLR SLSAAASPPA SRLRPRASVS TSPAPSKDYE ASSEQAPVPS CFTPMHFTDG
101: NGEVELRLDI QKLGIASSKD VFVDVDDTSL LIRAKSDGTL RTLMNVQTLF DRIKSSETIW FIDEDQLVVN LKKVEQELKW PDVDESWESL TSGITQLLTG
201: ISVHIVGDST HINEAVAKEI AEGIGYLPVC TSELLESATE KSIDTWVASE GVDSVAEAES VVLESLSSHV RTVVATLGGK QGAASRFDKW QYLHSGFTVW
301: LSVSDASDEA SAREEARRSV SSGSVSYAKA DVVVKLGGWD PEYTRAVAQG CLVALKQLTL ADKKLAGKKS LYIRLGCRGD WPNIEPPGWD PESDAPPTNI

Best Arabidopsis Sequence Match ( AT2G35500.1 )
(BLAST)

001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT

Arabidopsis Description

SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.