CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EES05709
EES12364
KXG19616
KXG21735
KXG38894
OQU75612
OQU75930
OQU76071
OQU85385
OQU89852

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35500.1	EES12364	AT2G42490.1	21798944
AT2G35500.1	OQU89852	AT2G42490.1	21798944
AT2G35500.1	EES05709	AT4G17680.1	21798944
AT2G35500.1	KXG38894	AT4G17680.1	21798944
AT2G35500.1	EER89430	AT4G25200.1	21798944
AT2G35500.1	EER89431	AT4G25200.1	21798944
AT2G35500.1	KXG19616	AT4G25200.1	21798944
AT2G35500.1	OQU75612	AT4G25200.1	21798944
AT2G35500.1	OQU75930	AT4G25200.1	21798944
AT2G35500.1	OQU76071	AT4G25200.1	21798944
AT2G35500.1	OQU85385	AT4G25200.1	21798944
AT2G35500.1	KXG21735	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G050970.1	Barley	cytosol	61.24	92.22
Zm00001d030109_P002	Maize	plastid	89.15	86.25
TraesCS1A01G195500.2	Wheat	plastid	79.84	81.53
Os10t0577700-01	Rice	plastid	78.55	81.07
TraesCS1D01G199100.1	Wheat	plastid	78.81	80.69
GSMUA_Achr2P12160_001	Banana	plastid	51.42	51.29
KRH74369	Soybean	plastid	47.03	49.32
VIT_02s0012g01800.t01	Wine grape	plastid	46.25	48.25
AT2G35500.1	Thale cress	plastid	47.8	47.8
Bra017318.1-P	Field mustard	plastid	46.25	46.13
CDY32125	Canola	plastid	46.25	46.13
PGSC0003DMT400038338	Potato	plastid	44.19	44.88
Solyc08g076410.2.1	Tomato	plastid	44.7	44.82
KRH49412	Soybean	cytosol	26.1	43.16
CDY61809	Canola	cytosol	20.93	34.32
CDX94450	Canola	cytosol	19.64	32.48

Protein Annotations

KEGG:00400+2.7.1.71	Gene3D:2.60.40.790	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8086288	UniProt:C5WQP1
InterPro:CS_dom	EnsemblPlants:EER94425	ProteinID:EER94425	ProteinID:EER94425.1	GO:GO:0000287	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009536	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR008978	PFAM:PF01202	PFscan:PS51203
PANTHER:PTHR21087	PANTHER:PTHR21087:SF11	MetaCyc:PWY-6163	EnsemblPlantsGene:SORBI_3001G284200	SUPFAM:SSF49764	unigene:Sbi.7474
InterPro:Shikimate/glucono_kinase	UniParc:UPI0001A82E42	RefSeq:XP_002467427.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:55677399..55680315

Molecular Weight (calculated)

41736.0 Da

IEP (calculated)

5.323

GRAVY (calculated)

-0.228

Length

387 amino acids

Sequence
(BLAST)

001: MRIGAGAAAA ANMAACSSVP CSFPTKPDPH RRGRSSHLPR LPAATQFRRF RSLSAAAAAS SSASRLRPRA SVSASAAPSK DYEFTDGNGE VELRLDIQKL
101: GIESARDVFV DVDDTSLLIR AKSDGTLRTL MNVQTLFDRI KSSETIWFID EDQLVVNLKK VEQELKWPDI DESWESLTSG ITQLLTGISV HIVGDSTHIN
201: EAVAKEIAEG IGYLPVCTSE LLESATQKSI DTWVASEGAD SVAEAESVVL ESLSSHVRTV VATLGGKQGA ASRFDRWQYL HSGFTVWLSV SDASDEATAR
301: EEARRSVSSG SVSYAKADVV VKLGGWDPEY TRAVAQGCLV ALKQLTLADK KLAGKKSLYI RLGCRGDWPN IEPPGWDPES DAPPTNI

Best Arabidopsis Sequence Match ( AT2G35500.1 )
(BLAST)

001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT

Arabidopsis Description

SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.