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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400038338 Potato plastid 95.6 96.85
VIT_02s0012g01800.t01 Wine grape plastid 59.07 61.46
KRH74369 Soybean plastid 55.18 57.72
HORVU1Hr1G050970.1 Barley cytosol 37.82 56.81
Bra017318.1-P Field mustard plastid 55.44 55.15
CDY32125 Canola plastid 55.18 54.9
AT2G35500.1 Thale cress plastid 54.92 54.78
GSMUA_Achr2P12160_001 Banana plastid 50.78 50.52
TraesCS1A01G195500.2 Wheat plastid 45.34 46.17
KRH49412 Soybean cytosol 27.98 46.15
TraesCS1D01G199100.1 Wheat plastid 44.56 45.5
Os10t0577700-01 Rice plastid 43.52 44.8
EER94425 Sorghum plastid 44.82 44.7
Zm00001d030109_P002 Maize plastid 44.82 43.25
CDY61809 Canola cytosol 23.58 38.56
CDX94450 Canola cytosol 23.06 38.03
Protein Annotations
KEGG:00400+2.7.1.71Gene3D:2.60.40.790Gene3D:3.40.50.300MapMan:35.1InterPro:CS_domGO:GO:0000287
GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0009507GO:GO:0009536InterPro:HSP20-like_chaperoneInterPro:IPR007052InterPro:IPR008978UniProt:K4CN04
PFAM:PF01202PFAM:PF04969PFscan:PS51203PANTHER:PTHR21087PANTHER:PTHR21087:SF11SUPFAM:SSF49764
InterPro:Shikimate/glucono_kinaseEnsemblPlantsGene:Solyc08g076410.2EnsemblPlants:Solyc08g076410.2.1UniParc:UPI000276BEBESEG:seg:
Description
Probable inactive shikimate kinase like 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G35500) UniProtKB/Swiss-Prot;Acc:O82290]
Coordinates
chr8:+:60424045..60428371
Molecular Weight (calculated)
42314.8 Da
IEP (calculated)
5.170
GRAVY (calculated)
-0.309
Length
386 amino acids
Sequence
(BLAST)
001: MASSSSSSSS SVALSFLYQN PIKASLSIPK ALSPYSKLTF PSIATFYSAI PRFDYSNFRK INPCLHCSNL PTASTNNTHY EFSDGSSEVE LRLELGQGDV
101: TPKDIYVDAN ESSLAIRVQQ SGIVRTLMET STLYEKIKPA ETIWYIDEDQ LVISLKKQNS ELKWPDIVES WESLSAGITQ LLRGTSIYLV GESTEINQRI
201: ARELAVGLGY TPLCTKELLE TYAKQSMETW VNEEGSDAVA EAESAILESL SSQARAVIAT LGGKKGAAGR VNQWRHLFAG FTVWLSLSQA TDEESAKEEA
301: KRNMQDSGRG YSNAEVVVKL GGWDPNYSKA VAQAVLSALK RLILADKDLP GKKSLYIRLG CRGDWPDIKP PGWDPSTSLD ASSPRS
Best Arabidopsis Sequence Match ( AT2G35500.1 )
(BLAST)
001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT
Arabidopsis Description
SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.