Factsheet for Os10t0577700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0593100-00
Os02t0687500-01
Os02t0758000-01
Os04t0136200-00
Os04t0476100-01
Os06t0219500-00
Os10t0565500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35500.1	Os02t0593100-00	AT2G42490.1	21798944
AT2G35500.1	Os04t0136200-00	AT2G42490.1	21798944
AT2G35500.1	Os04t0476100-01	AT2G42490.1	21798944
AT2G35500.1	Os02t0687500-01	AT4G17680.1	21798944
AT2G35500.1	Os10t0565500-01	AT4G17680.1	21798944
AT2G35500.1	Os02t0758000-01	AT4G25200.1	21798944
AT2G35500.1	Os06t0219500-00	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G050970.1	Barley	cytosol	62.93	91.83
TraesCS1A01G195500.2	Wheat	plastid	81.6	80.74
TraesCS1D01G199100.1	Wheat	plastid	80.8	80.16
EER94425	Sorghum	plastid	81.07	78.55
Zm00001d030109_P002	Maize	plastid	82.13	77.0
GSMUA_Achr2P12160_001	Banana	plastid	51.73	50.0
KRH74369	Soybean	plastid	48.53	49.32
VIT_02s0012g01800.t01	Wine grape	plastid	48.0	48.52
AT2G35500.1	Thale cress	plastid	48.27	46.77
Bra017318.1-P	Field mustard	plastid	47.73	46.13
CDY32125	Canola	plastid	47.73	46.13
PGSC0003DMT400038338	Potato	plastid	44.8	44.09
KRH49412	Soybean	cytosol	27.2	43.59
Solyc08g076410.2.1	Tomato	plastid	44.8	43.52
CDY61809	Canola	cytosol	20.8	33.05
CDX94450	Canola	cytosol	19.73	31.62

Protein Annotations

KEGG:00400+2.7.1.71	Gene3D:2.60.40.790	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4349500	ProteinID:ABB48026.1
EMBL:AK061718	EMBL:AK100237	ProteinID:BAF27330.1	ProteinID:BAT12216.1	InterPro:CS_dom	GO:GO:0000287
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR008978	EnsemblPlantsGene:Os10g0577700
EnsemblPlants:Os10t0577700-01	PFAM:PF01202	PFscan:PS51203	PANTHER:PTHR21087	PANTHER:PTHR21087:SF11	UniProt:Q336N7
SUPFAM:SSF49764	InterPro:Shikimate/glucono_kinase	UniParc:UPI00005E1FC5	RefSeq:XP_015613108.1	SEG:seg	:

Description

CS domain containing protein. (Os10t0577700-01)

Coordinates

chr10:+:23032206..23034966

Molecular Weight (calculated)

40545.9 Da

IEP (calculated)

4.628

GRAVY (calculated)

-0.162

Length

375 amino acids

Sequence
(BLAST)

001: MLASTCFSAP PPSSSSPSIP THLATLCCCF RPPARPPWPR SLLLLGAFPP PTRPLPRASV SSSTAPAKDY EFTDGGGEVE LRLDIGKLGI ENSRDVFVDV
101: DDTSLLVRAK SDGTLRTLIN VKQLFDRIKS SETIWFIDED QLVVNLKKVE QELKWPDIDE SWESLTSGIT QLLTGISVHI VGDSTDINEA VAKEIAEGIG
201: YLPVCTSELL ESATEKSIDK WLASEGVDSV AEAECVVLES LSSHVRTVVA TLGGKQGAAS RFDKWQYLHA GFTVWLSVSD ASDEASAKEE ARRSVSSGNV
301: AYAKADVVVK LGGWDPEYTR AVAQGCLVAL KQLTLADKKL AGKKSLYMRL GCRGDWPNIE PPGWDPDSDA PPTNI

Best Arabidopsis Sequence Match ( AT2G35500.1 )
(BLAST)

001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT

Arabidopsis Description

SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.