Factsheet for PGSC0003DMT400038338

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400004642
PGSC0003DMT400012249
PGSC0003DMT400052841
PGSC0003DMT400068387
PGSC0003DMT400069515
PGSC0003DMT400076175

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35500.1	PGSC0003DMT400076175	AT2G33150.1	21798944
AT2G35500.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT2G35500.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT2G35500.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT2G35500.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT2G35500.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT2G35500.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT2G35500.1	PGSC0003DMT400068387	AT4G17680.1	21798944
AT2G35500.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076410.2.1	Tomato	plastid	96.85	95.6
VIT_02s0012g01800.t01	Wine grape	plastid	59.58	61.19
KRH74369	Soybean	plastid	55.91	57.72
HORVU1Hr1G050970.1	Barley	cytosol	38.06	56.42
Bra017318.1-P	Field mustard	plastid	56.96	55.93
CDY32125	Canola	plastid	56.69	55.67
AT2G35500.1	Thale cress	plastid	55.91	55.04
GSMUA_Achr2P12160_001	Banana	plastid	51.71	50.77
TraesCS1A01G195500.2	Wheat	plastid	45.93	46.17
KRH49412	Soybean	cytosol	28.08	45.73
TraesCS1D01G199100.1	Wheat	plastid	45.14	45.5
Os10t0577700-01	Rice	plastid	44.09	44.8
EER94425	Sorghum	plastid	44.88	44.19
Zm00001d030109_P002	Maize	plastid	44.88	42.75
CDY61809	Canola	cytosol	23.62	38.14
CDX94450	Canola	cytosol	23.1	37.61

Protein Annotations

KEGG:00400+2.7.1.71	EntrezGene:102585169	Gene3D:2.60.40.790	Gene3D:3.40.50.300	MapMan:35.1	InterPro:CS_dom
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR008978	UniProt:M1B6P0	PFAM:PF01202	PFAM:PF04969
EnsemblPlantsGene:PGSC0003DMG400014792	PGSC:PGSC0003DMG400014792	EnsemblPlants:PGSC0003DMT400038338	PFscan:PS51203	PANTHER:PTHR21087	PANTHER:PTHR21087:SF11
SUPFAM:SSF49764	InterPro:Shikimate/glucono_kinase	UniParc:UPI0002963B50	RefSeq:XP_006352906.1	:	:

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014792]

Coordinates

chr8:+:49060456..49065050

Molecular Weight (calculated)

41883.5 Da

IEP (calculated)

5.348

GRAVY (calculated)

-0.313

Length

381 amino acids

Sequence
(BLAST)

001: MASSSSVALS FLYQNPIKAS LSIPKTFSPY SKLTFPSIAS FYSAIPRLDY SNFKKINPCL HCSNLPTAST NNTQYEFSDG SSEVELRLEL GQGDVTPKDI
101: YVDANESSLA IRVKQSGIVR TLMETSTLYE KIKPAETIWY IDEDQLVISL KKQNSELKWP DIVESWESLS AGITQLLRGT SIYLVGESTE INQRIARELA
201: VGLGYTPLCT KELLEAYAKQ SMESWVNEEG SDAVAEAERA ILESLSSQAR AVIATLGGKK GAAGRVNQWR HLFAGFTVWL SLSQATDEES AKEEAKRNMQ
301: DSGRGYSNAE VVVKLGGWDP NYSKAVAQAV LSALKRLILA DKDLPGKKSL YIRLGCRGDW PDIKPPGWDP STSLDASSPR S

Best Arabidopsis Sequence Match ( AT2G35500.1 )
(BLAST)

001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT

Arabidopsis Description

SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.