Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G199100.1 | Wheat | plastid | 98.05 | 66.67 |
| TraesCS1A01G195500.2 | Wheat | plastid | 97.67 | 66.23 |
| Os10t0577700-01 | Rice | plastid | 91.83 | 62.93 |
| EER94425 | Sorghum | plastid | 92.22 | 61.24 |
| Zm00001d030109_P002 | Maize | plastid | 92.61 | 59.5 |
| KRH74369 | Soybean | plastid | 59.14 | 41.19 |
| VIT_02s0012g01800.t01 | Wine grape | plastid | 59.14 | 40.97 |
| AT2G35500.1 | Thale cress | plastid | 59.92 | 39.79 |
| GSMUA_Achr2P12160_001 | Banana | plastid | 59.53 | 39.43 |
| Bra017318.1-P | Field mustard | plastid | 58.75 | 38.92 |
| CDY32125 | Canola | plastid | 58.75 | 38.92 |
| PGSC0003DMT400038338 | Potato | plastid | 56.42 | 38.06 |
| Solyc08g076410.2.1 | Tomato | plastid | 56.81 | 37.82 |
| KRH49412 | Soybean | cytosol | 33.07 | 36.32 |
| CDY61809 | Canola | cytosol | 31.13 | 33.9 |
| CDX94450 | Canola | cytosol | 29.57 | 32.48 |
Protein Annotations
| KEGG:00400+2.7.1.71 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | EnsemblPlantsGene:HORVU1Hr1G050970 | EnsemblPlants:HORVU1Hr1G050970.1 | InterPro:HSP20-like_chaperone |
| InterPro:IPR008978 | UniProt:M0W661 | PFAM:PF01202 | PANTHER:PTHR21087 | PANTHER:PTHR21087:SF11 | SUPFAM:SSF49764 |
| InterPro:Shikimate/glucono_kinase | UniParc:UPI000296696C | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:378190494..378192542
Molecular Weight (calculated)
27781.7 Da
IEP (calculated)
4.451
GRAVY (calculated)
-0.128
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVGTLFDRV KSSETIWFID EDQLVVNLKK VEQELKWPDI DESWKSLTAG ITQLLTGISI HIVGDSTDIN EAVAKEIAEG IGYLPVCTSE LLESATQKSV
101: DTWVAAEGVD SVAEAECVVL ESLSSHVRTV VATLGGKQGA ASRFDKWQYL HSGFTVWLSV SEAGDEASAK EEARRSVSTG SVAYAKADVV VKLGGWDPEY
201: TQAVAQGCLV ALKQLTLADK KLAGKKSLYI RLGCRGDWPN IEPPGWDPQS DAPPTNI
101: DTWVAAEGVD SVAEAECVVL ESLSSHVRTV VATLGGKQGA ASRFDKWQYL HSGFTVWLSV SEAGDEASAK EEARRSVSTG SVAYAKADVV VKLGGWDPEY
201: TQAVAQGCLV ALKQLTLADK KLAGKKSLYI RLGCRGDWPN IEPPGWDPQS DAPPTNI
001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT
Arabidopsis Description
SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.