Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G036500.7 | Barley | plastid | 76.45 | 90.69 |
| TraesCS7D01G179300.1 | Wheat | plastid | 75.62 | 86.32 |
| TraesCS7B01G130900.1 | Wheat | plastid | 57.44 | 85.8 |
| TraesCS7D01G179400.1 | Wheat | plastid | 74.38 | 85.71 |
| TraesCS7A01G232500.1 | Wheat | plastid | 71.9 | 84.47 |
| TraesCS7A01G236700.1 | Wheat | plastid | 73.97 | 84.43 |
| TraesCS7B01G083300.1 | Wheat | cytosol | 46.28 | 84.21 |
| TraesCS7B01G083100.1 | Wheat | plastid | 73.97 | 84.04 |
| TraesCS7D01G232600.1 | Wheat | plastid | 72.31 | 83.73 |
| TraesCS7D01G179500.1 | Wheat | plastid | 73.55 | 82.79 |
| TraesCS7B01G082900.1 | Wheat | plastid | 67.36 | 81.5 |
| HORVU7Hr1G036570.2 | Barley | cytosol | 74.38 | 81.45 |
| TraesCS7D01G179000.1 | Wheat | plastid | 71.49 | 81.22 |
| TraesCS7B01G083400.1 | Wheat | plastid | 71.07 | 80.75 |
| TraesCS7A01G177500.1 | Wheat | cytosol, plastid | 71.9 | 80.56 |
| TraesCS7A01G177700.1 | Wheat | cytosol, plastid | 71.9 | 80.56 |
| TraesCS7D01G179100.1 | Wheat | plastid | 71.49 | 80.47 |
| HORVU7Hr1G036540.3 | Barley | mitochondrion, nucleus, plastid | 84.3 | 79.07 |
| TraesCS7D01G179200.1 | Wheat | cytosol, plastid | 67.36 | 77.99 |
| TraesCS7B01G083200.2 | Wheat | plastid | 70.66 | 77.38 |
| TraesCS7A01G177600.1 | Wheat | plastid | 66.94 | 75.35 |
| TraesCS7A01G177800.1 | Wheat | nucleus | 59.5 | 62.61 |
| TraesCS2B01G531300.1 | Wheat | plastid | 40.91 | 56.25 |
| OQU76071 | Sorghum | plastid | 35.54 | 42.57 |
| TraesCS5B01G123900.1 | Wheat | plastid | 40.5 | 41.0 |
| EER89430 | Sorghum | plastid | 38.43 | 40.97 |
| Solyc08g078700.2.1 | Tomato | plastid | 35.54 | 40.95 |
| PGSC0003DMT400012249 | Potato | mitochondrion | 35.54 | 40.76 |
| Zm00001d044874_P001 | Maize | cytosol, plastid | 34.71 | 40.38 |
| KRH39841 | Soybean | mitochondrion | 23.55 | 38.78 |
| KRH23958 | Soybean | mitochondrion | 33.88 | 38.68 |
| OQU75930 | Sorghum | plastid | 35.12 | 38.12 |
| OQU75612 | Sorghum | plastid | 35.12 | 38.12 |
| VIT_02s0154g00480.t01 | Wine grape | mitochondrion, plastid | 30.58 | 36.82 |
| VIT_16s0022g00510.t01 | Wine grape | mitochondrion | 31.41 | 36.54 |
| AT5G51440.1 | Thale cress | mitochondrion | 30.58 | 35.24 |
| EER89431 | Sorghum | plastid | 31.41 | 35.02 |
| VIT_02s0154g00490.t01 | Wine grape | mitochondrion | 28.51 | 34.33 |
| AT4G25200.1 | Thale cress | mitochondrion | 29.75 | 34.29 |
| GSMUA_Achr10P... | Banana | mitochondrion | 30.58 | 34.26 |
| CDY38862 | Canola | mitochondrion | 27.69 | 34.18 |
| CDY00476 | Canola | mitochondrion | 22.73 | 34.16 |
| CDY32630 | Canola | mitochondrion | 23.97 | 34.12 |
| Bra029174.1-P | Field mustard | mitochondrion | 27.69 | 34.01 |
| CDX89437 | Canola | mitochondrion | 28.93 | 32.86 |
| Bra013872.1-P | Field mustard | mitochondrion | 28.93 | 32.86 |
| CDX99920 | Canola | mitochondrion | 21.49 | 32.5 |
| CDY03368 | Canola | mitochondrion | 28.51 | 32.39 |
| Bra028253.1-P | Field mustard | mitochondrion | 20.66 | 31.06 |
| HORVU6Hr1G077710.3 | Barley | cytosol | 34.3 | 30.4 |
| KXG19616 | Sorghum | plastid | 32.23 | 29.0 |
| Os06t0219500-00 | Rice | mitochondrion | 36.78 | 28.8 |
| PGSC0003DMT400012247 | Potato | mitochondrion | 18.18 | 22.56 |
| Solyc08g078710.1.1 | Tomato | mitochondrion | 17.77 | 21.94 |
| PGSC0003DMT400012246 | Potato | plastid | 14.05 | 20.0 |
| Solyc08g078720.2.1 | Tomato | mitochondrion | 13.22 | 19.05 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G036470.3 | EnsemblPlantsGene:HORVU7Hr1G036470 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | ncoils:Coil | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF176 | PFAM:PF00011 |
| PFscan:PS01031 | SEG:seg | SUPFAM:SSF49764 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr7H:-:84846602..85031958
Molecular Weight (calculated)
27295.6 Da
IEP (calculated)
9.285
GRAVY (calculated)
-0.687
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: TRIQNNHSRE RERRGREKRE KREKEKREKT DIERETMASA VACKGATPAS LLKSGAPVAF CPLNTTAVTA DHRPYNTLVK EAIRYDDDYS GRDLVIPSFF
101: SQDVLDPLGA PTSMARLLSL MEGVATQTGL SSTAGASRLG RWVAKEDDGA VYLKVPMPGL TKEHVQVRAD KNILVIKGEG EKRPWDGDDD FAVPRYNHRI
201: EIPADAYKMD KIKAEMKNGM LWVTLLKLKE EERKDVFHVK VE
101: SQDVLDPLGA PTSMARLLSL MEGVATQTGL SSTAGASRLG RWVAKEDDGA VYLKVPMPGL TKEHVQVRAD KNILVIKGEG EKRPWDGDDD FAVPRYNHRI
201: EIPADAYKMD KIKAEMKNGM LWVTLLKLKE EERKDVFHVK VE
001: MASALALKRL LSSSIAPRSR SVLRPAVSSR LFNTNAVRSY DDDGENGDGV DLYRRSVPRR RGDFFSDVFD PFSPTRSVSQ VLNLMDQFME NPLLSATRGM
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN
Arabidopsis Description
HSP23.6HSP23.6-MITO [Source:UniProtKB/TrEMBL;Acc:A0A178USN5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.